VIGGS:GBrowse

Vigan.08G046100.01

Basic Information:

Name:	Vigan.08G046100.01 Multiple alignment Variant Information
Position:	Chr08:3628642..3633399 (+ strand)
Length:	4758

Functional Information:

Description:	Similar to Uncharacterized protein. [I1LEI8, Glycine max]
GO:	Biological Process: methionine biosynthetic process (GO:0009086)
	Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
	Molecular Function: S-methyl-5-thioribose kinase activity (GO:0046522)
InterPro:	Aminoglycoside phosphotransferase (IPR002575)
	Methylthioribose kinase (IPR009212)
	Protein kinase-like domain (IPR011009)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:57.66,32.06,29.24,42.50,26.98,40.28,35.54,46.35
Arabidopsis thaliana homolog:	AT1G49820.1

Automatic updates:

Name:	NM_001289298 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max methylthioribose kinase 1-like (LOC100807564), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:3628642..3628833 (+ strand)
Length:	192
Type:	five_prime_UTR

Position:	Chr08:3628834..3629019 (+ strand)
Length:	186
Type:	CDS

Position:	Chr08:3629198..3629507 (+ strand)
Length:	310
Type:	CDS

Position:	Chr08:3630077..3630251 (+ strand)
Length:	175
Type:	CDS

Position:	Chr08:3630340..3630541 (+ strand)
Length:	202
Type:	CDS

Position:	Chr08:3632550..3632764 (+ strand)
Length:	215
Type:	CDS

Position:	Chr08:3632992..3633157 (+ strand)
Length:	166
Type:	CDS

Position:	Chr08:3633158..3633399 (+ strand)
Length:	242
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G046100.01
TTCTCAAAAC AAAATCACAG TGTATATGGG TTTAGGAGAA TCAAAATGAA ATTGGTGTGA AAAAAAAATC TCAGCTTCTA
GCGTGCTTCT TCCAAATAAA GAATAGTAAG ACGCACTTCA AAGATTCCAT CAATTTGGGA CTTGAGAGAG TACCATTGCT
CCACTTCCTC CTCGCCACCA TCGGCGGCCA CCATGGTTTT CTCGGAGTTC CGACCGCTCG ACGAGAAGAC TCTCATCGAA
TACATAAAGT CCGTTCCTGC TCTCTCCTCC AAACTCGCCA ACAGTTTCGA TGACTTGTCT GTTAAAGAAG TCGGAGATGG
CAATCTTAAC TTCGTGTACA TTCTTTCCAA CTCCAAAGGT TCTCTTGTCA TCAAACAGGC TCTGCCGTAC GTTCGTTGCA
TTGGGGAATC GTGGCCTATG ACAAAGGAGA GGGCTTATTT TGAGACGCTG GCACTGAAAG AAGAGGGTCG TTTGAGCCCT
GAGCATGTCC CTGAAGTATA TCACTTTGAT CGTACCATGT CTTTGATCGC CATGCGTTAC TTGGAGCCCC CGCATATAAT
CCTCAGAAAA GGGTTGATTG CAGGAATTGA ATACCCTCTT TTAGCTGAGC ATATGGCTGA TTTCATGGCA AGGACACTCT
TCTTCACGTC TCTGCTTTTC CGCTCTACTA CTGAGCACAA ACGAGACGTT GCCGAATTTT GTGGCAATGT GGAGCTATGC
AGGCTGACTG AGCAGGTCGT TTTCTCTGAT CCTTATAAAA TTTCCGAATA TAATCGTTGG ACTACGCCCT ATCTTGACCG
TGATGCTGAG GCTGTCCGGG AAGACAACCT GCTGAAGCTT GAAGTTGCTG AGCTGAAATC TATGTTCATC GAGAGGGCCC
AGGCACTATT ACATGGTGAT CTACACACTG GTTCTGTGAT GGTTACTGGT GAATCAACTC AAGTTATTGA TCCAGAATTT
GCATTTTATG GACCGATGGG TTTTGATGTT GGAGCATTCT TGGGAAACTT GATTTTGGCC TTCTTTTCTC AAGACGGACA
TGCTGATGAA ACAAATGATC GAAAGGCCTA TAAGGAGTGG ATTCTGAAGA CAATCGAAGA CACATGGAAC CTTTTCCATC
ACAAATTCAC TTCACTTTGG GATGAGCACA GTAATGGTGC TGGTGAAGCG TATCTTCCAG CAATCTATAA CAATCCTGAG
GTTCAACTCC TTGTACAGAA GAAATACATG ACAAATTTGT TTCACGATAG TCTTGGATTT GGTGCTGCTA AAATGATACG
GAGAATTGTT GGTGTGGCGC ATGTTCAGGA TTTTGAATCC ATTGCTGATG CTGCCAAACG GGCAACTTGT GAACGCCGAG
CTCTTGAGTT AGCTAAGATG CTTCTCAAAG AAAGAAGAAA ATTTGAAGAC ATTGCTGAAA TTATTTCAGC AATTCGGCAA
TACTAACATC AGCTTTTGCT ACATCAATAA TACTTTAATG GATCATGTTT TCCAACATGC CTTTTGGTTT TGTGTACCAC
TATATACCTG TTTCCGAATT CACCAAAAAA ACATCATGTA CGAAAAAATT ATTTTTAGGA GAGGTTTGGT GAGAGATTTT
TATATTTTAT TCTCTATTTC AAGTTTATAT AGCACAAGAT AAAACAGTGA ATTAAAACAA AATAATAGAA AAATATTTTC
ACTTCTTA

[show][hide][copy]CDS

>Vigan.08G046100.01
ATGGTTTTCT CGGAGTTCCG ACCGCTCGAC GAGAAGACTC TCATCGAATA CATAAAGTCC GTTCCTGCTC TCTCCTCCAA
ACTCGCCAAC AGTTTCGATG ACTTGTCTGT TAAAGAAGTC GGAGATGGCA ATCTTAACTT CGTGTACATT CTTTCCAACT
CCAAAGGTTC TCTTGTCATC AAACAGGCTC TGCCGTACGT TCGTTGCATT GGGGAATCGT GGCCTATGAC AAAGGAGAGG
GCTTATTTTG AGACGCTGGC ACTGAAAGAA GAGGGTCGTT TGAGCCCTGA GCATGTCCCT GAAGTATATC ACTTTGATCG
TACCATGTCT TTGATCGCCA TGCGTTACTT GGAGCCCCCG CATATAATCC TCAGAAAAGG GTTGATTGCA GGAATTGAAT
ACCCTCTTTT AGCTGAGCAT ATGGCTGATT TCATGGCAAG GACACTCTTC TTCACGTCTC TGCTTTTCCG CTCTACTACT
GAGCACAAAC GAGACGTTGC CGAATTTTGT GGCAATGTGG AGCTATGCAG GCTGACTGAG CAGGTCGTTT TCTCTGATCC
TTATAAAATT TCCGAATATA ATCGTTGGAC TACGCCCTAT CTTGACCGTG ATGCTGAGGC TGTCCGGGAA GACAACCTGC
TGAAGCTTGA AGTTGCTGAG CTGAAATCTA TGTTCATCGA GAGGGCCCAG GCACTATTAC ATGGTGATCT ACACACTGGT
TCTGTGATGG TTACTGGTGA ATCAACTCAA GTTATTGATC CAGAATTTGC ATTTTATGGA CCGATGGGTT TTGATGTTGG
AGCATTCTTG GGAAACTTGA TTTTGGCCTT CTTTTCTCAA GACGGACATG CTGATGAAAC AAATGATCGA AAGGCCTATA
AGGAGTGGAT TCTGAAGACA ATCGAAGACA CATGGAACCT TTTCCATCAC AAATTCACTT CACTTTGGGA TGAGCACAGT
AATGGTGCTG GTGAAGCGTA TCTTCCAGCA ATCTATAACA ATCCTGAGGT TCAACTCCTT GTACAGAAGA AATACATGAC
AAATTTGTTT CACGATAGTC TTGGATTTGG TGCTGCTAAA ATGATACGGA GAATTGTTGG TGTGGCGCAT GTTCAGGATT
TTGAATCCAT TGCTGATGCT GCCAAACGGG CAACTTGTGA ACGCCGAGCT CTTGAGTTAG CTAAGATGCT TCTCAAAGAA
AGAAGAAAAT TTGAAGACAT TGCTGAAATT ATTTCAGCAA TTCGGCAATA CTAA

[show][hide][copy]PROTEIN

>Vigan.08G046100.01
MVFSEFRPLD EKTLIEYIKS VPALSSKLAN SFDDLSVKEV GDGNLNFVYI LSNSKGSLVI KQALPYVRCI GESWPMTKER
AYFETLALKE EGRLSPEHVP EVYHFDRTMS LIAMRYLEPP HIILRKGLIA GIEYPLLAEH MADFMARTLF FTSLLFRSTT
EHKRDVAEFC GNVELCRLTE QVVFSDPYKI SEYNRWTTPY LDRDAEAVRE DNLLKLEVAE LKSMFIERAQ ALLHGDLHTG
SVMVTGESTQ VIDPEFAFYG PMGFDVGAFL GNLILAFFSQ DGHADETNDR KAYKEWILKT IEDTWNLFHH KFTSLWDEHS
NGAGEAYLPA IYNNPEVQLL VQKKYMTNLF HDSLGFGAAK MIRRIVGVAH VQDFESIADA AKRATCERRA LELAKMLLKE
RRKFEDIAEI ISAIRQY*