GBrowse Details

Vigan.08G046900.01

Basic Information:
Name: Vigan.08G046900.01
Multiple alignment
Variant Information
Position: Chr08:3684537..3688838 (- strand)
Length: 4302
Functional Information:
Description: Similar to TIP41-like family protein. [V5N8L1, Phaseolus vulgaris]
InterPro: TIP41-like protein (IPR007303)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:46.03,37.78,20.01,22.68,34.44,29.47,23.15,20.58
Arabidopsis thaliana homolog: AT4G34270.1
Automatic updates:
Name: NM_001252773 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max TIP41-like family protein (LOC100815886), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254051 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max TIP41-like protein-like (LOC100811660), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3684537..3684761 (- strand)
Length: 225
Type: three_prime_UTR
Position: Chr08:3684762..3684866 (- strand)
Length: 105
Type: CDS
Position: Chr08:3686448..3686576 (- strand)
Length: 129
Type: CDS
Position: Chr08:3686844..3686885 (- strand)
Length: 42
Type: CDS
Position: Chr08:3686990..3687049 (- strand)
Length: 60
Type: CDS
Position: Chr08:3687437..3687547 (- strand)
Length: 111
Type: CDS
Position: Chr08:3687749..3687839 (- strand)
Length: 91
Type: CDS
Position: Chr08:3688064..3688249 (- strand)
Length: 186
Type: CDS
Position: Chr08:3688458..3688603 (- strand)
Length: 146
Type: CDS
Position: Chr08:3688604..3688838 (- strand)
Length: 235
Type: five_prime_UTR


>Vigan.08G046900.01
TTTTAGAATG TTTCTGAATA ATTTGTAAAT TTTAATATAT TATGGGCTTT ATTTTCAGAA AATAAAAAAA TAACAAAATT
ATTTTGATTG TTTTTCTGTA TAGCAAGAAA TTATGGAAGT ACAAAAGGCA AGGTATGTGG CTGACCGGAA GGCCCATTTC
TAATACCCAA TTCTTAAAAG AGAGTCTCTG TGACTGTAAC TCGGGAATCA CCCAGTGAGT TGAAACCCGA AGGCGATGAT
GGATTTGGAA GTCGACGAGA ACAACTTGAA AGCCGCCGGC GCCGAGCTCT TCGCCGACGA TGGCCGACGA GGCATTCGCA
TCAGTGGTTG GTCGATCGAG ACTCGGAGGC ACTCTATACT GAACTCTTCC GCCATCCAGG AGTGGGAACA GAAACTCAAC
ACGTCTCATT TACCAGAAAT GGTTTTCGGG GAGAACACTT TAATTCTGAG ACACTTTAGC AGTGGCACCA GAATTCACTT
TAATGCATTT GATGCTCTTT GTGGCTGGAA ACAGGAAGCC TTGCCGCCAG TTGAAGTTCC TGCAGCTGCT AAGTGGAAAT
TTAGAAGCAA GCCCTCTCAG CAAGTAATAC TAGATTACGA CTACACCTTT ACAACACCTT ATTGTGGAAG TGGCAATATT
GAGATTGATA AAGATGTGAA TGAGGGAGAG ATATCGAAGG AAACCAGTGA TATCCTTTGG GAAGACTGCA AGGATCAAAT
TGATGTAGCA GCACTTGCAT CCAAAGAGCC CATACTTTTC TATGATGAGG TGGTGTTATA CGAGGATGAA CTTGCTGATA
ATGGAGTATC ACTTCTTACT GTAAAAGTGA GAGTAATGCC AAGCTCTTGG TTTCTTCTGT TGCGATTCTG GCTTAGAGTT
GATGGAGTGC TGATTAGATT GAGAGAAACA CGTATGCATT GTGTGTTTGG TGGACATACA AGTCCCATTG TACTTCGAGA
GAGTTGCTGG AGAGAATCTA CATTTCAAGC TTTGTCTGCA CAAGATCACC CTTTTGATTC TGGTGCGTAT GGTGATCCAA
GCTTCATCAG CCAGAAGCTC CCCATCATAA TGCATACGAC CAAAAAGCTT GTAATTTCCT CTTAAGTTAC AAGACTGTAA
ATTCGCGTAG CAGAGAAGGG TTTCTGATAA ATTCTTATGT TGTTCATATT TTATTCATCG TTTTACCTGG CTGTTAGAAT
TTAGAAACCA TAAATATCTT CTTATGAGAT AAGCTCTGGG TGTTTAGTTT TTGTACGAAA GATGGGGGGA TCCAATTTTA
ATGTGAGGGA CTCATTTCAC ATGGAAATAA ATGAGAGGTT ATACTTAAAG 

>Vigan.08G046900.01
ATGATGGATT TGGAAGTCGA CGAGAACAAC TTGAAAGCCG CCGGCGCCGA GCTCTTCGCC GACGATGGCC GACGAGGCAT
TCGCATCAGT GGTTGGTCGA TCGAGACTCG GAGGCACTCT ATACTGAACT CTTCCGCCAT CCAGGAGTGG GAACAGAAAC
TCAACACGTC TCATTTACCA GAAATGGTTT TCGGGGAGAA CACTTTAATT CTGAGACACT TTAGCAGTGG CACCAGAATT
CACTTTAATG CATTTGATGC TCTTTGTGGC TGGAAACAGG AAGCCTTGCC GCCAGTTGAA GTTCCTGCAG CTGCTAAGTG
GAAATTTAGA AGCAAGCCCT CTCAGCAAGT AATACTAGAT TACGACTACA CCTTTACAAC ACCTTATTGT GGAAGTGGCA
ATATTGAGAT TGATAAAGAT GTGAATGAGG GAGAGATATC GAAGGAAACC AGTGATATCC TTTGGGAAGA CTGCAAGGAT
CAAATTGATG TAGCAGCACT TGCATCCAAA GAGCCCATAC TTTTCTATGA TGAGGTGGTG TTATACGAGG ATGAACTTGC
TGATAATGGA GTATCACTTC TTACTGTAAA AGTGAGAGTA ATGCCAAGCT CTTGGTTTCT TCTGTTGCGA TTCTGGCTTA
GAGTTGATGG AGTGCTGATT AGATTGAGAG AAACACGTAT GCATTGTGTG TTTGGTGGAC ATACAAGTCC CATTGTACTT
CGAGAGAGTT GCTGGAGAGA ATCTACATTT CAAGCTTTGT CTGCACAAGA TCACCCTTTT GATTCTGGTG CGTATGGTGA
TCCAAGCTTC ATCAGCCAGA AGCTCCCCAT CATAATGCAT ACGACCAAAA AGCTTGTAAT TTCCTCTTAA 

>Vigan.08G046900.01
MMDLEVDENN LKAAGAELFA DDGRRGIRIS GWSIETRRHS ILNSSAIQEW EQKLNTSHLP EMVFGENTLI LRHFSSGTRI
HFNAFDALCG WKQEALPPVE VPAAAKWKFR SKPSQQVILD YDYTFTTPYC GSGNIEIDKD VNEGEISKET SDILWEDCKD
QIDVAALASK EPILFYDEVV LYEDELADNG VSLLTVKVRV MPSSWFLLLR FWLRVDGVLI RLRETRMHCV FGGHTSPIVL
RESCWRESTF QALSAQDHPF DSGAYGDPSF ISQKLPIIMH TTKKLVISS*