GBrowse Details

Vigan.08G048800.01

Basic Information:
Name: Vigan.08G048800.01
Multiple alignment
Variant Information
Position: Chr08:3822275..3825078 (+ strand)
Length: 2804
Functional Information:
Description: Similar to Uncharacterized protein. [C6ZS01, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Leucine-rich repeat (IPR001611)
Leucine-rich repeat-containing N-terminal, type 2 (IPR013210)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.90,1.32,40.80,40.58,30.59,38.60,57.29,39.13
Automatic updates:
Name: NM_001251674 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max leucine-rich repeat protein (LOC100306422), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254120 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100816279), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3822275..3822333 (+ strand)
Length: 59
Type: five_prime_UTR
Position: Chr08:3822334..3822589 (+ strand)
Length: 256
Type: CDS
Position: Chr08:3822879..3823011 (+ strand)
Length: 133
Type: CDS
Position: Chr08:3823186..3823257 (+ strand)
Length: 72
Type: CDS
Position: Chr08:3823720..3823863 (+ strand)
Length: 144
Type: CDS
Position: Chr08:3823983..3824054 (+ strand)
Length: 72
Type: CDS
Position: Chr08:3824148..3824219 (+ strand)
Length: 72
Type: CDS
Position: Chr08:3824703..3824769 (+ strand)
Length: 67
Type: CDS
Position: Chr08:3824770..3825078 (+ strand)
Length: 309
Type: three_prime_UTR


>Vigan.08G048800.01
AACCAATGCG TGACTTTTCC ACTCATCGCC CGTTTGAACC ATAATATAAT AATTTGACCA TGACTCAGTC TTCTTTTTCC
AACCACTGCC AACTTGGTCC ACTTTTTTCT TCTCTTCTCT CTTCTTTAGT CCTTGCCCTT CACCTTTTTT TCCTTCCTCT
TTCCAAAGTC TACCTCTTTC TTTCTTACTT TCTCTCATTC AACCAAAAGA TTGCTCACAA AGGAGGAATA ATGGCAGTGA
CACCTTTCGT TTCCCTCTCT TTCTTGTTTC TCTTTCTCCA TTACCCCCTC CTATCCCTGT CAACCAATCC GGAAGGGAAT
GCTCTGCATG CTTTGAGAAG CAGGCTTTCT GATCCCAACA ATGTGTTGCA GAGTTGGGAC CCAACACTGG TTAATGCCTG
TACTTGGTTC CATGTTACCT GTGATTCCAA CAATCATGTG ATTCGCTTAG ACTTGGGCAA CTCTAACGTT TCTGGGACTC
TGGGCCCAGA ACTTGGCCAG CTACAGCATC TTCAGTACCT GGAACTCTAC AGAAATGACT TAACAGGAAA GATTCCTGAG
GAACTTGGTA ACTTGAAGTC ACTAATCAGC ATGGATTTGT ATGATAACAA GTTGGAGGGA AAGATTCCAA AGTCCTTTGG
AAAGTTGAAG TCACTTAAAT TCCTGCGGAT AAACAACAAC AAGTTGACAG GATCCATCCC AAGAGAACTC ACTCATCTCA
CTGATCTCAA AATCCTTGAT GTTTCTAATA ACGACCTATG TGGAACAATA CCAGTAGAGG GCAACTTCGA ATCTTTCCCA
ATGGAAAGTT TTGAAAACAA CAGGTTTTGT GGTCCTGAAC TGAAAGGACT TGTTCCATAT GATTTTGGAT GCTGAAGAAA
GATATAAATC GCAAGGAAGA GGCTTAGTTT ACTTGGGAAA GGAAGGGAAA GGGTGGTGTT AATTGCCCAT CAAAATTTCC
TCACCATTCT TACACTCTTA GATGGGAAAA AGTTGAAATA TGTGTTTTTC TTATTTTGTT ATAAAGAAAG AAGTGATTTA
AAAATGTTCT GAAAAACAAT TGTGTGTAAA TAACATTGTT AATGATGTAT GTTTCACCCG AATAGGAATC TAAAAATGTC
AGGCTTGTAT GTCCATCTAT CTAATAACAT CTTTCCATGG CTTTATGGCA TAGTTTTGCA GTAA

>Vigan.08G048800.01
ATGACTCAGT CTTCTTTTTC CAACCACTGC CAACTTGGTC CACTTTTTTC TTCTCTTCTC TCTTCTTTAG TCCTTGCCCT
TCACCTTTTT TTCCTTCCTC TTTCCAAAGT CTACCTCTTT CTTTCTTACT TTCTCTCATT CAACCAAAAG ATTGCTCACA
AAGGAGGAAT AATGGCAGTG ACACCTTTCG TTTCCCTCTC TTTCTTGTTT CTCTTTCTCC ATTACCCCCT CCTATCCCTG
TCAACCAATC CGGAAGGGAA TGCTCTGCAT GCTTTGAGAA GCAGGCTTTC TGATCCCAAC AATGTGTTGC AGAGTTGGGA
CCCAACACTG GTTAATGCCT GTACTTGGTT CCATGTTACC TGTGATTCCA ACAATCATGT GATTCGCTTA GACTTGGGCA
ACTCTAACGT TTCTGGGACT CTGGGCCCAG AACTTGGCCA GCTACAGCAT CTTCAGTACC TGGAACTCTA CAGAAATGAC
TTAACAGGAA AGATTCCTGA GGAACTTGGT AACTTGAAGT CACTAATCAG CATGGATTTG TATGATAACA AGTTGGAGGG
AAAGATTCCA AAGTCCTTTG GAAAGTTGAA GTCACTTAAA TTCCTGCGGA TAAACAACAA CAAGTTGACA GGATCCATCC
CAAGAGAACT CACTCATCTC ACTGATCTCA AAATCCTTGA TGTTTCTAAT AACGACCTAT GTGGAACAAT ACCAGTAGAG
GGCAACTTCG AATCTTTCCC AATGGAAAGT TTTGAAAACA ACAGGTTTTG TGGTCCTGAA CTGAAAGGAC TTGTTCCATA
TGATTTTGGA TGCTGA

>Vigan.08G048800.01
MTQSSFSNHC QLGPLFSSLL SSLVLALHLF FLPLSKVYLF LSYFLSFNQK IAHKGGIMAV TPFVSLSFLF LFLHYPLLSL
STNPEGNALH ALRSRLSDPN NVLQSWDPTL VNACTWFHVT CDSNNHVIRL DLGNSNVSGT LGPELGQLQH LQYLELYRND
LTGKIPEELG NLKSLISMDL YDNKLEGKIP KSFGKLKSLK FLRINNNKLT GSIPRELTHL TDLKILDVSN NDLCGTIPVE
GNFESFPMES FENNRFCGPE LKGLVPYDFG C*