GBrowse Details

Vigan.08G050200.01

Basic Information:
Name: Vigan.08G050200.01
Multiple alignment
Variant Information
Position: Chr08:3896956..3901366 (+ strand)
Length: 4411
Functional Information:
Description: Similar to ATP-dependent Clp protease proteolytic subunit. [V7BC00, Phaseolus vulgaris]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: serine-type endopeptidase activity (GO:0004252)
InterPro: ClpP (IPR001907)
Clp protease proteolytic subunit /Translocation-enhancing protein TepA (IPR023562)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:87.08,59.60,58.74,221.46,25.70,36.50,22.71,52.90
Arabidopsis thaliana homolog: AT1G49970.1
Automatic updates:
Name: BT095788 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-25G16 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3896956..3897149 (+ strand)
Length: 194
Type: five_prime_UTR
Position: Chr08:3897150..3897333 (+ strand)
Length: 184
Type: CDS
Position: Chr08:3898123..3898235 (+ strand)
Length: 113
Type: CDS
Position: Chr08:3898390..3898590 (+ strand)
Length: 201
Type: CDS
Position: Chr08:3898714..3898818 (+ strand)
Length: 105
Type: CDS
Position: Chr08:3898913..3898975 (+ strand)
Length: 63
Type: CDS
Position: Chr08:3899109..3899220 (+ strand)
Length: 112
Type: CDS
Position: Chr08:3900166..3900227 (+ strand)
Length: 62
Type: CDS
Position: Chr08:3900323..3900511 (+ strand)
Length: 189
Type: CDS
Position: Chr08:3900590..3900673 (+ strand)
Length: 84
Type: CDS
Position: Chr08:3900674..3901366 (+ strand)
Length: 693
Type: three_prime_UTR


>Vigan.08G050200.01
AGATTAAGAG GTATTAAGAT TATGAAAAAA ACAGAATAGT GTTTATAACC CGACCCGTTT ACCACAAGAA GTGGATAGTG
GCTTCTAGCA CACCTATCTT CCTCGCCGTT GGAACCAAAA CTATATTTCT GGTGTCATAC CCTTCACCCC TTCACATCAA
ATTTTGAAAC TTTGTTTCCA ATTGCGTGTA CCCAATGTCC TCTTCTCTCT CCCCACCACT TTCTGGGTCC TTCATCCACG
ATTCTTCGTT CCTCCGTGGA ACAAAGCTTT TTCCCCTTTC TCGAAGAGTG GTACCACGCG GCTTCAGCTC TTTCTCTGCT
AAGTGCTCCC TCGACCACGT CCCCAAACAG TTCAGAAAGG AAAATCTCGC AGATGGATTG ACGCAAAACT ACAAGAACGT
ACCTCAATAT CTATATGGCC TTACACCTTC ACAAATGGAC ATGTTCATGA CAGGAGATGC TATCAGCGGG CAAACTGCAA
GAGTTACAGA GGAAAGCATC TCATCTGCCA AGAATTATAT AGATAATGGT GGAACGTGGA GTCTATCTGG CATGGGGAAA
AATGATGCTT CAAGATACAG CATGAGTGCT AGAATGTATC AAGGAGGTTG GGGAAGTGAA AGGCCACCAA CTGCTCCACC
AGATCTGCCT TCTTTGCTTT TGGATGCTCG AATATGCTAT CTGGGTATGC CGATTGTTCC AGCTGTGACG GAACTTATTG
TTGCTCAATT CATGTGGTTG GATTTTGATA ACCCAACCAA ACCTATTTAC TTTTACATTA ATTCATCTGG AACTCAGAAT
GAGAAGCATG AGACAGTGGG ATCAGAAACT GACGCATATT CCATAGCTGA TATGATTTCT TATGTCAAAG CAGATGTGTA
TACTGTGAAT TGTGGTATGG CATTTGGTCA GGCAGCAATG CTTCTGTCTC TTGGAACAAA GGGTTATCGT GCGGTACAAC
CAAACTCATC TACAAAATTA TATCTCCCAA AGGTCAATAG ATCAAGTGGT GCTGTTATAG ACATGTGGAT CAAGGCAAAA
GAGCTTGAGG CAAATTCGGA CTATTACATT GATCTGTTGG TAAAAGGGAC AGGGAAATCA AAGGAAGAAA TTACTAAAGA
TGTTCAGAGG CCTAAGTATC TTCAAGCACA GCAAGCTATA GACTACGGAC TTGCTGACAA AATGATTCAG TCAAGTTCAA
CGGATTCTGC ATTTGAGAAG CGGAACTATG AGGAAATTCT TGCTCAATCA AGTATGAGGA ATCAAGGTGG TGTCGATCCT
CAAGCGTCTC CTTCGGGATT CAGGTAATCA CACAGCGAAA GGCCACTTAA TCGCTCCGAA TCCAATGCCC TTCAATGCTA
TATGGGTTTA AGTTGACGAC TGGTGTAAAG GTCCAGCAGC TATCTCATCA AAAGGCCAAA TTGGAAACTT TCAACGGAGA
GATATTATAT GAAAATTGTA TCTTGGCTGT TGGGTGACTT TTTCAATACT TAAATTACAT ATGCTTAGTT TGAATAACTT
AATGTAAATA TTGATTGAGA CACATCATGT TTGCTCAGTA GCTGGCATTG TGTCCTTGAA AATTTTTGCT TTGATTTTTC
TTGTCCCAGA TTAACAATTT CGCAGTAGTT GTTTTGCAAT TAAGTGAATG CATATGTGAC TTCAATTTAT AATTTACACT
ATACCTACTT GCACGAAGTG CACAGTTTGA AGAAAATCTA GAAAAACAGA CTATTAGTTT ACTTGTTTTT GGCATTCACA
AGAGGGAAGT GAAACACTAA ATAAAAAAAG AAAACCCTGT CAGACATGGC CATCAAGAAT TACGCTGGAG GATTGGGATA
GACTTTGGGC TTCGGCTTCA CCTCAATCTC GTTTACACTA CGGACAAAAA TAGCATCTGA TTCGTTGCTG TGAATGCAAT
GAACAAAGTT ACTTAAACAA GCTCGTATAA GAGAGTCAGA TAGTTAGATA CAGAACATAC CTTTTAGGTC CTTCTTCGAA

>Vigan.08G050200.01
ATGTCCTCTT CTCTCTCCCC ACCACTTTCT GGGTCCTTCA TCCACGATTC TTCGTTCCTC CGTGGAACAA AGCTTTTTCC
CCTTTCTCGA AGAGTGGTAC CACGCGGCTT CAGCTCTTTC TCTGCTAAGT GCTCCCTCGA CCACGTCCCC AAACAGTTCA
GAAAGGAAAA TCTCGCAGAT GGATTGACGC AAAACTACAA GAACGTACCT CAATATCTAT ATGGCCTTAC ACCTTCACAA
ATGGACATGT TCATGACAGG AGATGCTATC AGCGGGCAAA CTGCAAGAGT TACAGAGGAA AGCATCTCAT CTGCCAAGAA
TTATATAGAT AATGGTGGAA CGTGGAGTCT ATCTGGCATG GGGAAAAATG ATGCTTCAAG ATACAGCATG AGTGCTAGAA
TGTATCAAGG AGGTTGGGGA AGTGAAAGGC CACCAACTGC TCCACCAGAT CTGCCTTCTT TGCTTTTGGA TGCTCGAATA
TGCTATCTGG GTATGCCGAT TGTTCCAGCT GTGACGGAAC TTATTGTTGC TCAATTCATG TGGTTGGATT TTGATAACCC
AACCAAACCT ATTTACTTTT ACATTAATTC ATCTGGAACT CAGAATGAGA AGCATGAGAC AGTGGGATCA GAAACTGACG
CATATTCCAT AGCTGATATG ATTTCTTATG TCAAAGCAGA TGTGTATACT GTGAATTGTG GTATGGCATT TGGTCAGGCA
GCAATGCTTC TGTCTCTTGG AACAAAGGGT TATCGTGCGG TACAACCAAA CTCATCTACA AAATTATATC TCCCAAAGGT
CAATAGATCA AGTGGTGCTG TTATAGACAT GTGGATCAAG GCAAAAGAGC TTGAGGCAAA TTCGGACTAT TACATTGATC
TGTTGGTAAA AGGGACAGGG AAATCAAAGG AAGAAATTAC TAAAGATGTT CAGAGGCCTA AGTATCTTCA AGCACAGCAA
GCTATAGACT ACGGACTTGC TGACAAAATG ATTCAGTCAA GTTCAACGGA TTCTGCATTT GAGAAGCGGA ACTATGAGGA
AATTCTTGCT CAATCAAGTA TGAGGAATCA AGGTGGTGTC GATCCTCAAG CGTCTCCTTC GGGATTCAGG TAA

>Vigan.08G050200.01
MSSSLSPPLS GSFIHDSSFL RGTKLFPLSR RVVPRGFSSF SAKCSLDHVP KQFRKENLAD GLTQNYKNVP QYLYGLTPSQ
MDMFMTGDAI SGQTARVTEE SISSAKNYID NGGTWSLSGM GKNDASRYSM SARMYQGGWG SERPPTAPPD LPSLLLDARI
CYLGMPIVPA VTELIVAQFM WLDFDNPTKP IYFYINSSGT QNEKHETVGS ETDAYSIADM ISYVKADVYT VNCGMAFGQA
AMLLSLGTKG YRAVQPNSST KLYLPKVNRS SGAVIDMWIK AKELEANSDY YIDLLVKGTG KSKEEITKDV QRPKYLQAQQ
AIDYGLADKM IQSSSTDSAF EKRNYEEILA QSSMRNQGGV DPQASPSGFR *