GBrowse Details

Vigan.08G050400.01

Basic Information:
Name: Vigan.08G050400.01
Multiple alignment
Variant Information
Position: Chr08:3905023..3909880 (+ strand)
Length: 4858
Functional Information:
Description: Similar to Zinc finger protein-like protein. [G7IET7, Medicago truncatula]
InterPro: Zinc finger, RING/FYVE/PHD-type (IPR013083)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:23.02,17.57,22.52,20.68,28.68,20.26,22.91,27.58
Arabidopsis thaliana homolog: AT2G14835.1
Automatic updates:
Name: NM_001253248 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max zinc finger protein-like 1-like (LOC100805734), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255820 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100775639 (LOC100775639), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3905023..3905284 (+ strand)
Length: 262
Type: five_prime_UTR
Position: Chr08:3905285..3905308 (+ strand)
Length: 24
Type: CDS
Position: Chr08:3905708..3905788 (+ strand)
Length: 81
Type: CDS
Position: Chr08:3906087..3906207 (+ strand)
Length: 121
Type: CDS
Position: Chr08:3906295..3906389 (+ strand)
Length: 95
Type: CDS
Position: Chr08:3907071..3907142 (+ strand)
Length: 72
Type: CDS
Position: Chr08:3907843..3908085 (+ strand)
Length: 243
Type: CDS
Position: Chr08:3908258..3908366 (+ strand)
Length: 109
Type: CDS
Position: Chr08:3908489..3908675 (+ strand)
Length: 187
Type: CDS
Position: Chr08:3909051..3909132 (+ strand)
Length: 82
Type: CDS
Position: Chr08:3909133..3909880 (+ strand)
Length: 748
Type: three_prime_UTR


>Vigan.08G050400.01
AAAAAATGTG AAGGAAAAGA AAAACTCAAA CGGATCTGAA TTGCAAACGT AGGAGGGGGT TTTGTTTCGG AGTGAACTGA
GCCTATATCA ACACAAACAA CATTTTCAGT GAATCAACAC GAGAAAAAGA GAGAAAAAGA TTATTGTCTA CGTGATTTCG
ATTATTTGAT CATGCTCTTC GCTTCAATTC CCCTTTCTAA ATCCTCTTGA TTTTCTTTTT CCGAATAACG TCAGATTCGA
TTGAATTATA CCCCTCAATG CAATGGTGGT CTGCAAATGT CGCAAGGCTA CTAAATTATA CTGCTTCGTG CACAAAGTTC
CTGTCTGCGG GGAATGTATC TGCTTCCCGG AGCACCAAAT CTGCGTGGTT CGAACTTATT CGGAATGGGT TATAGATGGG
GAGTATGATT GGCCTCCTAA ATGCTGCCAA TGTCAGGCTG TTTTAGAAGA GGGGGATGCA TCTCAAACTA CTCGACTGGG
CTGCTTGCAT GTTATCCACA CAAACTGCTT CGTCTCGCAT ATCAAGAGTT TTCCTCCCCA TACTGCCCCA GCAGGATATG
CGTGTCCTTC ATGTTCTACT TCTATATGGC CTCCCAAAAG TGTGAAAGAT TCGGGGTCAC GTCTACATTC CAAGTTGAAG
GAAGCTATCA TGCAGTCTGG CATGGAAAAG AATGTTTTTG GAAATCATCC AGTTTCGATG ACAGAATCGC GAAGTCCTCC
GCCTGCTTTT TCTTCAGATC CATTGGTTAG TAGGGAAAAT CATGGAAACT CAGACCACGT CGATGGATTC TCACCAGCAA
CTGGGTCAGA ACTACCTAAA CTTACAGTGG CTGATGTTAT GGAGATAGAT GGTGCTAATT CAGTGGGAAA TTTCATGAAA
GCCTCAAGTC CTGGTGCTCC TGGTGCCACC ACAAGGAAGG GCTCAGTCCA TGTTGAACGA CAGAATTCTG AAATTTCTTA
CTATGCTGAC GATGAAGACG GGAATAGGAA AAAGTACTCA AAACGAGGTC CATTCCACCA TAAGTTTCTT AGAGCTTTGC
TTCCTTTCTG GTCTACTTCC TTACCTACTC TACCAGTGAC TGCGCCTCCA AGGAAAGATG CAACAAATAC AGCTGAAACC
TCAGAAGGCC GTACACGGCA TCAAAGATCA TCGAGGATGG ACCCAAGAAA AATTCTTCTT CTGATTGCAA TTATGGCTTG
CATGGCAACT ATGGGTATAT TGTATTACAG ACTGGTGCAA CGGGGTCCAG GGGATGAGCT TCCTAATGAG GAATAAATTT
GCAATGGAGC TCTTAAAATC CGGACACGCT CGCTGGCTCC CATTTTGGAT ATTGCTGGTT TCTTGTTGCT TCTGCTGCTT
CTTATCTGTT TGGCTTCTTT ATTTGGACCA GTCGCTGTTT TGGCCAACAT ACAAGTAGTT TGTTGATAAT TTTTCATCTG
AATGCCGATG ACAGTGACTT GATGCATAAA TTCTTAGTCA GCCATCTTTG CTCTTTGCCC TCAGTTTTGG TACCCTCTTG
GAATGTAATT GCAGATTTAA ATATTGCAAT CTTAATTGGA TTAAGTTGTA TCCATCATTT CAAATGCACA TTGTTAGTCA
GTCAACATTT TTATCTGTAG TTTTTATACA AAAACTCATA CAATGTTGTT ATGCATTATA TATTTTCATA GACCTGTGAT
ATGAAAATAT GGCCATCTGC ATCTGCACTG ATGATACCGC ATGTTTGTGA CCTTTATCTT TTGATTTGGC TGAGTGTAGG
ACGTTGAGTA GTATTTCTGT TCCATCGGAA AATTGAGAAG GAATGCTCTA GAACTCCGCA GCTGAAACCA TATTTAGGTT
GGACGATTCG TTCGGGCCTA CAAATCATAG GCAACAACGA CATAAATACA ACCAAGAATG CCATGAAGTC AGCATTTGGG
GGGGCACTCA TACATGCTCT CGCTTATAAT CTAGACTAGA CCTTTACGCA TTTGGTTGAG AGGAAAGAAA TTAAGCAGCC
AAAGTATATT TTTTAAATTG CGGG

>Vigan.08G050400.01
ATGGTGGTCT GCAAATGTCG CAAGGCTACT AAATTATACT GCTTCGTGCA CAAAGTTCCT GTCTGCGGGG AATGTATCTG
CTTCCCGGAG CACCAAATCT GCGTGGTTCG AACTTATTCG GAATGGGTTA TAGATGGGGA GTATGATTGG CCTCCTAAAT
GCTGCCAATG TCAGGCTGTT TTAGAAGAGG GGGATGCATC TCAAACTACT CGACTGGGCT GCTTGCATGT TATCCACACA
AACTGCTTCG TCTCGCATAT CAAGAGTTTT CCTCCCCATA CTGCCCCAGC AGGATATGCG TGTCCTTCAT GTTCTACTTC
TATATGGCCT CCCAAAAGTG TGAAAGATTC GGGGTCACGT CTACATTCCA AGTTGAAGGA AGCTATCATG CAGTCTGGCA
TGGAAAAGAA TGTTTTTGGA AATCATCCAG TTTCGATGAC AGAATCGCGA AGTCCTCCGC CTGCTTTTTC TTCAGATCCA
TTGGTTAGTA GGGAAAATCA TGGAAACTCA GACCACGTCG ATGGATTCTC ACCAGCAACT GGGTCAGAAC TACCTAAACT
TACAGTGGCT GATGTTATGG AGATAGATGG TGCTAATTCA GTGGGAAATT TCATGAAAGC CTCAAGTCCT GGTGCTCCTG
GTGCCACCAC AAGGAAGGGC TCAGTCCATG TTGAACGACA GAATTCTGAA ATTTCTTACT ATGCTGACGA TGAAGACGGG
AATAGGAAAA AGTACTCAAA ACGAGGTCCA TTCCACCATA AGTTTCTTAG AGCTTTGCTT CCTTTCTGGT CTACTTCCTT
ACCTACTCTA CCAGTGACTG CGCCTCCAAG GAAAGATGCA ACAAATACAG CTGAAACCTC AGAAGGCCGT ACACGGCATC
AAAGATCATC GAGGATGGAC CCAAGAAAAA TTCTTCTTCT GATTGCAATT ATGGCTTGCA TGGCAACTAT GGGTATATTG
TATTACAGAC TGGTGCAACG GGGTCCAGGG GATGAGCTTC CTAATGAGGA ATAA

>Vigan.08G050400.01
MVVCKCRKAT KLYCFVHKVP VCGECICFPE HQICVVRTYS EWVIDGEYDW PPKCCQCQAV LEEGDASQTT RLGCLHVIHT
NCFVSHIKSF PPHTAPAGYA CPSCSTSIWP PKSVKDSGSR LHSKLKEAIM QSGMEKNVFG NHPVSMTESR SPPPAFSSDP
LVSRENHGNS DHVDGFSPAT GSELPKLTVA DVMEIDGANS VGNFMKASSP GAPGATTRKG SVHVERQNSE ISYYADDEDG
NRKKYSKRGP FHHKFLRALL PFWSTSLPTL PVTAPPRKDA TNTAETSEGR TRHQRSSRMD PRKILLLIAI MACMATMGIL
YYRLVQRGPG DELPNEE*