GBrowse Details

Vigan.08G051800.01

Basic Information:
Name: Vigan.08G051800.01
Multiple alignment
Variant Information
Position: Chr08:3999316..4000657 (+ strand)
Length: 1342
Functional Information:
Description: Similar to pollen-specific protein SF3-like. [XP_004496871.1, Cicer arietinum]
GO: Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, LIM-type (IPR001781)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,20.27,0.00,0.00,0.00,0.00,0.00
Automatic updates:
Name: NM_001249532 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max LIM-type zinc finger-containing protein (LOC100306027), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3999316..3999421 (+ strand)
Length: 106
Type: five_prime_UTR
Position: Chr08:3999422..3999559 (+ strand)
Length: 138
Type: CDS
Position: Chr08:3999653..3999749 (+ strand)
Length: 97
Type: CDS
Position: Chr08:3999898..3999944 (+ strand)
Length: 47
Type: CDS
Position: Chr08:4000154..4000237 (+ strand)
Length: 84
Type: CDS
Position: Chr08:4000338..4000535 (+ strand)
Length: 198
Type: CDS
Position: Chr08:4000536..4000657 (+ strand)
Length: 122
Type: three_prime_UTR


>Vigan.08G051800.01
CAAGAAGAGA GAGAAAGGGC AAAGGAAATT CTTGCAGAAG AGTGCAACTC TTCCTCTCTT TCTCTCTTGT TCCTTCTTTA
GCCTTTGGTG ATAGACAGAA GAAGCCATGG CCAGCTTTGG AGGAACCACA CAAAAGTGCA TGGCTTGTGA CAAAACCGTC
TACCTTGTCG ATAAGCTAAC TGCTGATGGC CGTGTCTATC ACAAGGCCTG CTTCAGATGC CACCATTGCC GCAATACCCT
TAAGCTGAGC AACTACTGTT CTTTTGAGGG GGTGCTATAT TGCAGACCTC ATTATGATCA ACTTTACAAG CGAACTGGCA
GCTTGGACAA AAGCTTCGAA GGAACACCCA AAGTTCAGAA ACCAGAGAAA CCGATAACTG AAAATGAGAA CTCCAAGGGC
ATCGCAAACG TGTTCTTGGG TACCAGAGAC AAATGTGTGT GCTGCAAAAA GACAGTGTAT CCCACTGAGA GGGTAACCAT
TAATGGGACA CCCTACCATA AAAGCTGCTT CAAATGTACC TATGGAGGTT GCACTATAAG CTCATCAAAC TTCATCACAC
ACGAGGGAAA GCTGTACTGC AAACACCATC ACATTCAACT ATTCAAAGAG AAGGGTAATT ACAGTCAGCT TGAGAATGAC
CAAGTTGCTA CCACGGAAGT CGTTGCTTGA TGTGAACTGA CATAGAATGC TAGCAGTTGT TTTGATCCGT AATGCTTGTA
AACAATATCT GTATTCATGA GACAGAAAGT TGGTATATAT GGCATCTTCA TCGTTCAGAA TACTTTTCAC AA

>Vigan.08G051800.01
ATGGCCAGCT TTGGAGGAAC CACACAAAAG TGCATGGCTT GTGACAAAAC CGTCTACCTT GTCGATAAGC TAACTGCTGA
TGGCCGTGTC TATCACAAGG CCTGCTTCAG ATGCCACCAT TGCCGCAATA CCCTTAAGCT GAGCAACTAC TGTTCTTTTG
AGGGGGTGCT ATATTGCAGA CCTCATTATG ATCAACTTTA CAAGCGAACT GGCAGCTTGG ACAAAAGCTT CGAAGGAACA
CCCAAAGTTC AGAAACCAGA GAAACCGATA ACTGAAAATG AGAACTCCAA GGGCATCGCA AACGTGTTCT TGGGTACCAG
AGACAAATGT GTGTGCTGCA AAAAGACAGT GTATCCCACT GAGAGGGTAA CCATTAATGG GACACCCTAC CATAAAAGCT
GCTTCAAATG TACCTATGGA GGTTGCACTA TAAGCTCATC AAACTTCATC ACACACGAGG GAAAGCTGTA CTGCAAACAC
CATCACATTC AACTATTCAA AGAGAAGGGT AATTACAGTC AGCTTGAGAA TGACCAAGTT GCTACCACGG AAGTCGTTGC
TTGA

>Vigan.08G051800.01
MASFGGTTQK CMACDKTVYL VDKLTADGRV YHKACFRCHH CRNTLKLSNY CSFEGVLYCR PHYDQLYKRT GSLDKSFEGT
PKVQKPEKPI TENENSKGIA NVFLGTRDKC VCCKKTVYPT ERVTINGTPY HKSCFKCTYG GCTISSSNFI THEGKLYCKH
HHIQLFKEKG NYSQLENDQV ATTEVVA*