GBrowse Details

Vigan.08G053100.01

Basic Information:
Name: Vigan.08G053100.01
Multiple alignment
Variant Information
Position: Chr08:4128152..4132160 (- strand)
Length: 4009
Functional Information:
Description: Similar to mRNA, clone: RTFL01-12-E13. [E4MWQ8, Thellungiella halophila]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:105.81,47.51,22.52,114.24,3.68,30.92,7.91,18.20
Arabidopsis thaliana homolog: AT1G50020.1
Automatic updates:
Name: NM_001249204 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305745 (LOC100305745), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:4128152..4128388 (- strand)
Length: 237
Type: three_prime_UTR
Position: Chr08:4128389..4128511 (- strand)
Length: 123
Type: CDS
Position: Chr08:4129133..4129240 (- strand)
Length: 108
Type: CDS
Position: Chr08:4131025..4131254 (- strand)
Length: 230
Type: CDS
Position: Chr08:4131689..4131881 (- strand)
Length: 193
Type: CDS
Position: Chr08:4131882..4132160 (- strand)
Length: 279
Type: five_prime_UTR


>Vigan.08G053100.01
AATCTATTCG CGAAACAAAA ATCATGATTA TTTTGTCCAT GTTGTCAGCA GCCTCTGACC GCAAATCTAC GACTGGTTAC
TTCTTTCTCA CCACAAACGC AGACCCACCC CCCGCTCACA TTAGCCATCC TTAGTTCTAT CACTCTAAAC TGCGCTTGCC
GGTGCAAGCT CCACTCTACT TCTTACTTCC TCTAGAAGAA GCCTTTTCAC GTCTCTCTGC CACCAAACCC CTTTCATTCA
TTTGGGTTTG TCTGTCTTTT CAAATTTTGT GCCGTAGTTA TGGCTTCTCT GAGACCTACC CTCTCTCAAC TTTCCCTTTC
GCAATATAAT TTTCCCAGAA AATCTACGTG GAACAATCAC CTACCATGCT ATTTCCACAA AGGGATCGCA AAGCTGCATA
CTTTCACCTC TTCTAAGTCT TCCGCTTTCA GGGTCTGCTG TAGTTCCCAA GAGTCCAATA GCCAAAACAA TGGTGAAGAG
CCTCCGGAGT CATTATTTAT GAAGGAATTG AAGAGGAGAG GTATGACCCC TACATCATTG CTTGATGATT ACAAACAAAG
CAACTATGAA CTTGATGAAG AGGTGTTCGT GAATGAGGAA GATAGAGGTT TCCCCAAAAG AAAATCTGTC TCAACCAATG
TTGAGAGGAG TCTAGAAAAT CAGAGAGAAC GATCTATGGC CCTGAACAGT GAAGGTCTTG AGGGCTTAAT ACCTCGTGCT
AAACTTCTCT TGACGATTGG AGGAACATTC TTCTTGGGAT TTGGACCGTT GATCCTCATA ATTGTTGCAA CTTTTTCTGC
TCTATACTTC TATTTTGGAC CAACATTTGT CCATGATGCA AGCAAGATGG CCGTATCACC TCCACAATAT GTGGACCCTT
ACGCACTCCT AGAAGATGAA AGGATATCAC AGATAGCACC CCGTCTAAAC TAAAGGCAAG ACTACACATA CCTCTTAGGA
ATCTAGTTGC ATATATCAAA TTTCTGTTTT CTTAAGCCTC TGTTGATTTA GTGCCATTGT AAAATATCAT CCAGGATCAA
CTTGCTGTTA TCTATTTTCC TTTCATCATT GACTCAATTC TTTACATCCG CCTTTTCCAT TTTACATACA TCCTATGAAT
AATTAAAACT AAATAAAAGC TCCATCAGAA GAATCAAGCA TTGCGTATAA 

>Vigan.08G053100.01
ATGGCTTCTC TGAGACCTAC CCTCTCTCAA CTTTCCCTTT CGCAATATAA TTTTCCCAGA AAATCTACGT GGAACAATCA
CCTACCATGC TATTTCCACA AAGGGATCGC AAAGCTGCAT ACTTTCACCT CTTCTAAGTC TTCCGCTTTC AGGGTCTGCT
GTAGTTCCCA AGAGTCCAAT AGCCAAAACA ATGGTGAAGA GCCTCCGGAG TCATTATTTA TGAAGGAATT GAAGAGGAGA
GGTATGACCC CTACATCATT GCTTGATGAT TACAAACAAA GCAACTATGA ACTTGATGAA GAGGTGTTCG TGAATGAGGA
AGATAGAGGT TTCCCCAAAA GAAAATCTGT CTCAACCAAT GTTGAGAGGA GTCTAGAAAA TCAGAGAGAA CGATCTATGG
CCCTGAACAG TGAAGGTCTT GAGGGCTTAA TACCTCGTGC TAAACTTCTC TTGACGATTG GAGGAACATT CTTCTTGGGA
TTTGGACCGT TGATCCTCAT AATTGTTGCA ACTTTTTCTG CTCTATACTT CTATTTTGGA CCAACATTTG TCCATGATGC
AAGCAAGATG GCCGTATCAC CTCCACAATA TGTGGACCCT TACGCACTCC TAGAAGATGA AAGGATATCA CAGATAGCAC
CCCGTCTAAA CTAA

>Vigan.08G053100.01
MASLRPTLSQ LSLSQYNFPR KSTWNNHLPC YFHKGIAKLH TFTSSKSSAF RVCCSSQESN SQNNGEEPPE SLFMKELKRR
GMTPTSLLDD YKQSNYELDE EVFVNEEDRG FPKRKSVSTN VERSLENQRE RSMALNSEGL EGLIPRAKLL LTIGGTFFLG
FGPLILIIVA TFSALYFYFG PTFVHDASKM AVSPPQYVDP YALLEDERIS QIAPRLN*