GBrowse Details

Vigan.08G058000.01

Basic Information:
Name: Vigan.08G058000.01
Multiple alignment
Variant Information
Position: Chr08:4441053..4444623 (+ strand)
Length: 3571
Functional Information:
Description: Similar to Uncharacterized protein. [K7LLC9, Glycine max]
InterPro: DnaJ domain (IPR001623)
DnaJ domain, conserved site (IPR018253)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.75,12.55,12.02,9.97,17.26,6.70,15.17,14.16
Arabidopsis thaliana homolog: AT1G61770.1
Automatic updates:
Name: NM_001255458 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chaperone protein dnaJ 50-like (LOC100792705), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:4441053..4441123 (+ strand)
Length: 71
Type: five_prime_UTR
Position: Chr08:4441124..4441257 (+ strand)
Length: 134
Type: CDS
Position: Chr08:4441344..4441406 (+ strand)
Length: 63
Type: CDS
Position: Chr08:4441497..4441563 (+ strand)
Length: 67
Type: CDS
Position: Chr08:4441730..4441789 (+ strand)
Length: 60
Type: CDS
Position: Chr08:4441914..4441964 (+ strand)
Length: 51
Type: CDS
Position: Chr08:4442084..4442164 (+ strand)
Length: 81
Type: CDS
Position: Chr08:4442709..4442821 (+ strand)
Length: 113
Type: CDS
Position: Chr08:4443493..4443610 (+ strand)
Length: 118
Type: CDS
Position: Chr08:4443779..4443905 (+ strand)
Length: 127
Type: CDS
Position: Chr08:4444067..4444170 (+ strand)
Length: 104
Type: CDS
Position: Chr08:4444171..4444623 (+ strand)
Length: 453
Type: three_prime_UTR


>Vigan.08G058000.01
TTGGGGAGTT TGGGTCAACA GAGAGAAAGT AGGGAACAGA AGAAAAAGAA AGCCTCAACG TTTTCGGCGT CATGGATCCG
CTGCCGGCAG CGCTCCGGTG GCGCACGACC GCCATCCCAT TCCTCTTGGC GGTCCTCCTT TTATCCTCCG TCTACCCTTC
GCGCGCAATC TACTGCGACG AAGATGATTG CTACGATCTG CTTGGGGTTT CTCAGAGTGC CAATGCTTCC GAAATCAAGA
AAGCTTACTA CAAACTCTCC TTGAAGCATC ATCCAGATAA GAACCCTGAT CCCGAATCGC GAAAGCTGTT TGTTAAAATC
GCCAATGCTT ACGAGATTTT GAAGGACGAG GCCACGCGCG AACAATATGA TTATGCAATT GCACATCCAG AGGAGGTGCT
TTATAATACT GCACGTTACT ATCGGGCATA CTATGGTCAC AAGACGGATC CTCGAGCTGT GTTGGTTGGC CTTCTTATTA
TTCTTTCAGG TTTTCAATAT CTAAATCAAT CAACAAGGTA TAATCAGGCT GTAGCCATGG TCAAGAAGAC ACCTGCATAT
AAAAATAAAC TAAGGGCATT GGAACTTGAA CGCAGTGGAG GGATTACAAA CAAGAAGAAG AGTCAGAAGA ATACGGTCAA
GAAAGTGGAG GAAGACCTTA GCAATGAACT CGACCTGCAG ATAACTGGAG CTGAAAGGGC CTCTGTGTGG AAACTTCTTG
CTGTCCGCTT TGTTCTATTA CCTTATACCT TAGGCAAGCT GCTACTGTGG TCTGCCTGCT GGTTTTGGAG ATACAGAGTG
AAGAAAAACT CTTATTCTTG GGAGGATGCT TCTTATCTGA CACAACGATC CCTTGGTATT CCTCTCGATA GATGGAGACA
TATTGATGAA GCAACAAAGG AAGATCTTGT GCTCAAACGC TTATGGGAGA AATCGAATAT GGAGAGCTAT GTAGCAGAGA
TGCGGAAAGA ATCAAAACGC AGAAGATAGC TGCATTAGTG GCCTCGTCTG CTGCATTTAA AGTTCTAAAT TTGGTTTGAA
TTATGAAATT GAACTGAACG ACGAAGTGAC AATTAAAGTT AAAATTGGAA AGCTGCTAAT TGATTTGGAG GAGGAGGGGT
GATAGAAGCA GAATTATTCA TTTCAACCAC GAAATCGTGG AGTCATAAAC AAAGTTTAGT GAGTTTAAAC ATGTCTCTGA
CAGCCTGTAA ACAGTGAACA CTAAAGAATA CCGCATTCAT TTTATTTTAT TTTTTTGTTT CAAAGTCAGG TATTTAAGCC
TCACTCCCTC TAGAATCGGA TGTTCGGTAG TGGTTTTGTG CAACAATTTT AATGACATTA TATGAATTCT CGGCATGTTA
CAGTAGAGTT TTGACTTAAT GTATGTGTCT GAAATTGTTA TCCTTCCACT CTTCCTGTCG TAGTATATCG CGACTAGCGT
TG

>Vigan.08G058000.01
ATGGATCCGC TGCCGGCAGC GCTCCGGTGG CGCACGACCG CCATCCCATT CCTCTTGGCG GTCCTCCTTT TATCCTCCGT
CTACCCTTCG CGCGCAATCT ACTGCGACGA AGATGATTGC TACGATCTGC TTGGGGTTTC TCAGAGTGCC AATGCTTCCG
AAATCAAGAA AGCTTACTAC AAACTCTCCT TGAAGCATCA TCCAGATAAG AACCCTGATC CCGAATCGCG AAAGCTGTTT
GTTAAAATCG CCAATGCTTA CGAGATTTTG AAGGACGAGG CCACGCGCGA ACAATATGAT TATGCAATTG CACATCCAGA
GGAGGTGCTT TATAATACTG CACGTTACTA TCGGGCATAC TATGGTCACA AGACGGATCC TCGAGCTGTG TTGGTTGGCC
TTCTTATTAT TCTTTCAGGT TTTCAATATC TAAATCAATC AACAAGGTAT AATCAGGCTG TAGCCATGGT CAAGAAGACA
CCTGCATATA AAAATAAACT AAGGGCATTG GAACTTGAAC GCAGTGGAGG GATTACAAAC AAGAAGAAGA GTCAGAAGAA
TACGGTCAAG AAAGTGGAGG AAGACCTTAG CAATGAACTC GACCTGCAGA TAACTGGAGC TGAAAGGGCC TCTGTGTGGA
AACTTCTTGC TGTCCGCTTT GTTCTATTAC CTTATACCTT AGGCAAGCTG CTACTGTGGT CTGCCTGCTG GTTTTGGAGA
TACAGAGTGA AGAAAAACTC TTATTCTTGG GAGGATGCTT CTTATCTGAC ACAACGATCC CTTGGTATTC CTCTCGATAG
ATGGAGACAT ATTGATGAAG CAACAAAGGA AGATCTTGTG CTCAAACGCT TATGGGAGAA ATCGAATATG GAGAGCTATG
TAGCAGAGAT GCGGAAAGAA TCAAAACGCA GAAGATAG

>Vigan.08G058000.01
MDPLPAALRW RTTAIPFLLA VLLLSSVYPS RAIYCDEDDC YDLLGVSQSA NASEIKKAYY KLSLKHHPDK NPDPESRKLF
VKIANAYEIL KDEATREQYD YAIAHPEEVL YNTARYYRAY YGHKTDPRAV LVGLLIILSG FQYLNQSTRY NQAVAMVKKT
PAYKNKLRAL ELERSGGITN KKKSQKNTVK KVEEDLSNEL DLQITGAERA SVWKLLAVRF VLLPYTLGKL LLWSACWFWR
YRVKKNSYSW EDASYLTQRS LGIPLDRWRH IDEATKEDLV LKRLWEKSNM ESYVAEMRKE SKRRR*