GBrowse Details

Vigan.08G059600.01

Basic Information:
Name: Vigan.08G059600.01
Multiple alignment
Variant Information
Position: Chr08:4560231..4562629 (+ strand)
Length: 2399
Functional Information:
Description: Similar to uncharacterized GPI-anchored protein At3g06035-like. [XP_004496769.1, Cicer arietinum]
InterPro: CAP domain (IPR014044)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.09,0.24,2.72,2.68,1.88,21.47,3.16,30.01
Automatic updates:
Name: NM_001250032 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306063 (LOC100306063), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251343 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499681 (LOC100499681), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:4560231..4560572 (+ strand)
Length: 342
Type: five_prime_UTR
Position: Chr08:4560573..4560663 (+ strand)
Length: 91
Type: CDS
Position: Chr08:4561326..4561834 (+ strand)
Length: 509
Type: CDS
Position: Chr08:4561835..4562629 (+ strand)
Length: 795
Type: three_prime_UTR


>Vigan.08G059600.01
TAACAACACA TCAACAAAAA TGTAAAATTA CTGCGATTAT GTTGCATAAG ATAATGTCTT TCGAGTAAAG GAAATACCAT
CGTCTGTTCA TGCATGGGAA AAAATGACAA ACCCATTTGA ATCTGATACT GAAATACCAG CAACCATTTT CCTTACCGTT
GTGATGTCTT CGTCGGTATC AGTGTGATGT CTATAGCTTC TAACGTATGC TTGAAGAAAC AGAAAAGCAC CCTGCACAAG
GAAACTTGTG TTTGAATTGA ACCCCTCATA TAGGATCCCA AAGTGGCAAC TTCTTTTTCT ATGTGAGAGT CTTCGTCTAC
ATCAAACACT AAACAGAGAA GGATGGTGCT GCCCAAGTTC TATCTGTGTT TCTGGCTTCT CCTTTCTTCC CTTGTGATTC
TCTTGATGAA CCATCCAGTA AAATGTGACG ATGATGAGGA AGACAATCTT TATCAGGGTA TCAACAAGTA TCGAGCATCA
ATAAACTTGA AAGCTCTAAC AAGGAATGAC AATGCAGATT GCCTTGCTAA TAAAATAGCT GACCAATTCA AGAAACAACC
CTGCACGAAT ACCACAGGTT CTAACACCGT ACCTGGCACT GAGCCTCAGT TTTCAAACTA TCCAGACCTC CTAACAAAGT
GTCACTTGGC CATTTCCAAC ACAAGGGATG GAAATATAAT GCCTGTTTGT GTTCCTGGTC TGGTTCCAAG TCTTGTCCTA
ACTAATTTCA CGAAATCTCT CTACTCAGAT AGTCTCAATG ACACAAAATA TACAGGAATT GGTATTGGTT CAGAAGATAA
CTGGATTGTT GTTGTCTTGA CAACAAACAC TCCTGCGGGA ACCTTTTCTC CCTATACTTC TGATGGTGCC AATTTGATTT
CCAGATCTGG ATTGCTTTAT TGCTCAATGC TCTTCTTAGT TGGTTACATC TTCCTGTTAT GAAACAAAGA GGATGGCCGT
TGACAATGCT TTAAGGTTGC AATTTTGTTA CCAAAAAAAT GTTTGTCAGG GTGAGCTTAT TGAAGACAAC TGTTTTTTCT
AGATGGAAAT GGAGATGCCC TTGTGTAAGT GTTGTTTTGG TATTGTAATT CTATAGAATG CAAGGCAAAT AGGAGAAAGA
AGGCATTGTT CCCAAAGGAT TGTTATCTTA TTGTTGTCAT TATTATCAAT AATATAATTT TTTAGAGCTT GGCATCTGCC
AAATGATACA AGCTAATATG GATGGGGTTA ACAGAAAACA GGTAATATAT AAACAAGTCT ACTTTGAGGC TAAGGTCTAA
TGAGAGAAAA AGCATAACAG ATGGTCATAC TCCATTGGTC TAAAATGTCA TTGTTGGCAC TCCTTCAGAA AGGCAGTCTA
AACTGCCAGC TACACTCTCA TTATTTTACT CCATGGAAAA CAAAGCAAAT TTTAGCATAT TCTTGGATGA AAAGTTGTTT
TAAGAATTAC TCATGACATT CAAATTGCCT TCATTTTGGG GGAATTCACA GACATGTATC TTCCAATCAT GAGCATTAGA
ATCCATGTGG ACTTTGCGAT CTTCTCCTTT ACCATCAGAA GTAATGCAGA GCTAAGAACA GTTTTCAATA TCTGTGCCTG
CAATCCTTTG AAAAATCCCA ATACGCCTTC TCTTTTCCAA ATAGTATAGA GAGCTCCAGA GATTGTCCTC TGTGCCTTCC
TCTCAGCTTC TGTACGCTTA TCATCATCAG ATTCAGCAGC CTGAATCATG ACCTTAC

>Vigan.08G059600.01
ATGGTGCTGC CCAAGTTCTA TCTGTGTTTC TGGCTTCTCC TTTCTTCCCT TGTGATTCTC TTGATGAACC ATCCAGTAAA
ATGTGACGAT GATGAGGAAG ACAATCTTTA TCAGGGTATC AACAAGTATC GAGCATCAAT AAACTTGAAA GCTCTAACAA
GGAATGACAA TGCAGATTGC CTTGCTAATA AAATAGCTGA CCAATTCAAG AAACAACCCT GCACGAATAC CACAGGTTCT
AACACCGTAC CTGGCACTGA GCCTCAGTTT TCAAACTATC CAGACCTCCT AACAAAGTGT CACTTGGCCA TTTCCAACAC
AAGGGATGGA AATATAATGC CTGTTTGTGT TCCTGGTCTG GTTCCAAGTC TTGTCCTAAC TAATTTCACG AAATCTCTCT
ACTCAGATAG TCTCAATGAC ACAAAATATA CAGGAATTGG TATTGGTTCA GAAGATAACT GGATTGTTGT TGTCTTGACA
ACAAACACTC CTGCGGGAAC CTTTTCTCCC TATACTTCTG ATGGTGCCAA TTTGATTTCC AGATCTGGAT TGCTTTATTG
CTCAATGCTC TTCTTAGTTG GTTACATCTT CCTGTTATGA 

>Vigan.08G059600.01
MVLPKFYLCF WLLLSSLVIL LMNHPVKCDD DEEDNLYQGI NKYRASINLK ALTRNDNADC LANKIADQFK KQPCTNTTGS
NTVPGTEPQF SNYPDLLTKC HLAISNTRDG NIMPVCVPGL VPSLVLTNFT KSLYSDSLND TKYTGIGIGS EDNWIVVVLT
TNTPAGTFSP YTSDGANLIS RSGLLYCSML FLVGYIFLL*