GBrowse Details

Vigan.08G064400.01

Basic Information:
Name: Vigan.08G064400.01
Multiple alignment
Variant Information
Position: Chr08:4996488..5001232 (+ strand)
Length: 4745
Functional Information:
Description: Similar to Uncharacterized protein. [I1LE46, Glycine max]
InterPro: Frigida-like (IPR012474)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:197.19,371.44,55.00,49.58,63.06,70.31,66.05,49.54
Arabidopsis thaliana homolog: AT3G22440.1, AT4G14900.1
Automatic updates:
Name: NM_001360372 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max FRIGIDA-like protein 4a (LOC100805780), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:4996488..4996806 (+ strand)
Length: 319
Type: five_prime_UTR
Position: Chr08:4996807..4997701 (+ strand)
Length: 895
Type: CDS
Position: Chr08:4997793..4997968 (+ strand)
Length: 176
Type: CDS
Position: Chr08:4998749..4999255 (+ strand)
Length: 507
Type: CDS
Position: Chr08:4999256..5001232 (+ strand)
Length: 1977
Type: three_prime_UTR


>Vigan.08G064400.01
GTGAAAATAA ATAATTTATA GAAACTAATA TCAAGCTGGC CTAGTTGGTT TGCCCTGTTC GCACACCCAG CGCATTGTAG
CATCGCCCCT CAACCACCTT TTTCAGACAA CGACAACACG TGTCTCCACC TTACCCATCC ACGTCAGCAC AGGCTCTTTC
CCTCACTCTT CATTTCATTT TACCAGCACC ACCTTTACTC TTTGGTTCGT TCCTTCTTTC ATTCTTTCTT TCTTCTCTGA
TTGATTGAAC GCAGTGAGTG AGTGAGTGAG TGAGCGAGCG AGGTAGGGTT TTCGTGTGTT CTCTCTAGAG TTCGCGACCA
TGGGGTCCAT CCCCGATCCT GGCGAGTTGA GCGAGTTGAC TCAGCCGAGC TTCGACGAGT TCCAGCGCCA AACCTCTCTC
ATGACCAGCT GCACCCTCCT CTGGAAGGAG CTCTCCGACC ACTTTTCCTC TCTCGAGGAG GACCTCAAGC ACAAATCCGA
AGCTCTGAAA CGCAAGATGC GCACGCTCGA CACCGCCACC TCTGACTCCC TCCGCCTCCT TGACCGCCGC GAAACATCCC
TCGACGCCAC TCTCCAGATC GCCCTCCGCA CGCTCGACAC GCGCCGCACC GCCGCCATAA CCTCTTTCCT AGACGTCCAC
GCGGACGAGG ACGGCGGCGA GGTTGACGAC GCCACCGGCC TCGTCCTCAA ACTCAAGTCC TTCTGCCTCC GCATGGATGC
CTTTGGCTTC TGGGCCTTCC TCAGCGCCAA GAAGAAGGAG CTCGATGGCT TACGCGCCGA GGTCCCCGTC GCCCTCGCCG
AATGCGTCGA TCCGGCCAAA TTCGTCCTCG AGGCCATCTC CGAGGTCTTT CCAGTCGACA AGAGAGGGGA GAAGCCCGGC
CACGACCTAG GCTGGGCCTG CGTCCTTGTA CTCGAGTCTC TGATTCCGGT CGTTGTCGAC CCGGTCATCG GAAAATCGAG
GCTGTTGGTC ACCCCCACTG TGAAGGAGCA GGCCACGGAG ATAGCGGAGA CTTGGAAGGC CAGCCTGGAG GAGCGTGGCG
GCGCGGAAAA CGTGAAGACA CCCGACGTCC ACACCTTCTT GCAGCACGTG GTTACCTTCG GGATTGTCAA GAACGAGGAC
TTGGATTTGT ACCGGAAGCT TGTTATTGCT TCCGCTTGGA GGAAACAGAT GCCGAAGCTC GCGCTTTCGC TTGGTCTTAC
TCAGCAAATG CCTGATATGA TTGAAGAGTT GATCAGCAAA GGGCAGCAGC TTGATGCAGT TCATTTTACA TATGAGGTGG
GTCTTGTGGA AAAGTTCCCT CCTGTTCCCT TGTTGAAGTC TTTTCTCAAG GATGCTAAGA AAGTTGCGGC TTCTATTTTG
GAAGATCCTA ATAATGCAGG CCGAGCAGCG TACCTAGCTG CAAGGAAAGA GCAGTCTGCA CTCAGGGCTG TGATTAAATG
CATTGAAGAA TACAAACTTG AGGCTGATTT CCCTCCAGAA AATCTGAAGA AGCGACTTGA ACAGTTGGAG AAGGTGAAGA
CAGTGAAGAC CGAGAAAAGG AAACCGGCTG CTGTTCCTGC CAATAAGAGA ACTCGAGCAA GCAACAGCAA TGGAGGTCCA
ATGCCACCAG CCAAAGCTGG GCGTTTGACT AATGCGTATG TATCATCTTT CCCTGCTGCT CCTACATTTG TTAGGTCTCC
ATCACACGGG CAATACCCAG CTGCTCTTCC ACCATACCCT TCCCCACCCC ACATGTATGG CAGCAGAAGT CCCCCGGCAA
ATCCTTATGC TGCTTATTCG CCTGAGCCTG CACCAGCTAT TGCAGGGTCT TACCCAGCGG CTCCCATGAA TTATCCTGCA
TATGGTGGCT ATGGAAATGT CTTGGCACCC ACTTATCAGC AGGCTTACTA CCGATAGAAA TGACAACCCT CGAAGATGGT
AACCACTGAT ATGACGACCT TGATCCAATT TACTTTCGCA ATGTTGTTTG TAATCACTAA CCGTTTAACG GTAGCAGTTC
TGTGTGTTAA TTATAACTAC TGTCCCACTT CCTGCTCTGC GTGGGGAGAA GCTGTATTTC TAATGTTGAT CCCATAGTAC
TAGGTGATTG TGGAAAGTAA CTAGGACGGC CAAGAAACAT CAGAAACTCA ACAACCACTG TTCGGTTTAG TTGTAGAAAG
ACTTACTGTG TTTACATTAT ATGCTTATCT TGGGATCGAA CCGAAGGAAA ACAAAAAGAA AAAAGGTAAT CTGTTTCTTG
GCAGCTGTTG ACTATGGTAT AAAGACTATA AAGGAAATAA TTTTGTCTGA GATGAATGTT TTTACATTGA TGATGGGTTC
TGATTTCGCA CTACTGGACT ATGGTGTTTG TTAGTACTGC ATTCTTCCAA AGAATAGTTC TAAATCTTTA GTATTTAACC
CTTTATTTAT TAAATGCATG AAGTGTTAAT GTGTTTAAGA TGTTAAACAT GTTTTTTTAT GTAATATATT TTTCTATAAA
ATGTTAGGAA GATCAACTAG AGAATATTGT AGGAAGACTA ACAATTACCT TTTTATTTCC CCAAAACCTA AGATGATGAG
AAAAAGAATG TGAGTAACCT AGGTGGAGAA GGAAAGTTGG AGAATCCTGC CAGCTAAATC AGGGATGTGT ATTTGGTTTG
GTGGGACAGT AACAGTATAT CAGTTGGGGA TAAAAAATGG AGGGAACAGA TAGCAATTAT GTATTCCTAA ATAATAGGAA
CATTATTCTC ATTCACGCTA CTTACCTAAT TAAACCGAGC GCAACAACCC ATATAAAGGA AGAGAACATT CAGAACGTGA
GTAGGTAGTA AAGACCACTA AGGAGGCAGG GAATCTTTGA TGAGTATCCA TAAAAAGAAG GAAGAAAGCA CTCGGAACAT
ACAGTTATTG CAATGACCAC TACGGAGGCA GGGAATCTTT GATGGGTAGT TTTTTGCACT CCTATTAGCC CAACTATGGT
ATTTTTGTTA GTACCTCATT CAACCATGGT ATCTTATTAT TCCTTTTGTG GCATTCTTCT AAAGAATAAT TCTAAATTAA
TCCTCTCTTT ACTAATGTAG AAAGTATCGA TGCCTTCTTA TGTTTTTGAA AAATATTTTT CATATATTTT ATTATAAAAT
GCCAAAATTA AGGATGCAGA GAAAAGAACG CGAGTAAACC AGGTTTAGAA GGTAGTAGGA GAAATTGCCG ACTAAATTTA
GTTTGTGGTA TGTATTTAGT ATGTAGAATA TTATTTGTTA TTGAAATAAA ATATGAAGGA AAGAGATTGC AATTATGAAT
CCTAGGAAAA AAGTATTGAC ACTACTCAAC AACCCAAGAA AAGTAGGAAG AAACACAGAA GATAGGTGGT TGCAAAGAAG
ACCACATGGA GGCAGGGAAT CTTTTCTCAC ATGTTAAGCT AGCTTACACA GTCGAGTTAC AACTTGCTAC TCCACTTTTC
TTATTACTCA TACTTTGCTT TGGATTACTT TGATTTCACA TTCGACATTT CCACGAGGAC ATCCAGTTTC TACTCGGTCC
TTCCCGACGA TTCCCTGTTA CAGTAACTTC CGATTATGTT TGTAGTCTGA ACCCTCATAT TTCATGTACC ATTGTTTCTG
TGATGTCAAA ATCCTTCAAA TGGATATGAT ATGATGTTGT GTTTTGTGGA TCATGATGCT TGAGCTTGGC GAAAGTGTGA
AAACAAGCAG GGCTAGTAAG GAATGTGGTT GCATCATGGA TGACATGGTC TTCGGGTCAC AAGTTAGTGC CCCTTGTATG
GTGAGAGTGA AATGGCTTTT TGATTTTAGA ACAGATTATA CGATAAATCG TGGCAAATAT ATCTATAAAT TTGATCACAG
TTCCCGGGAT AATCCAGAAT TGGAATAATG AAAT

>Vigan.08G064400.01
ATGGGGTCCA TCCCCGATCC TGGCGAGTTG AGCGAGTTGA CTCAGCCGAG CTTCGACGAG TTCCAGCGCC AAACCTCTCT
CATGACCAGC TGCACCCTCC TCTGGAAGGA GCTCTCCGAC CACTTTTCCT CTCTCGAGGA GGACCTCAAG CACAAATCCG
AAGCTCTGAA ACGCAAGATG CGCACGCTCG ACACCGCCAC CTCTGACTCC CTCCGCCTCC TTGACCGCCG CGAAACATCC
CTCGACGCCA CTCTCCAGAT CGCCCTCCGC ACGCTCGACA CGCGCCGCAC CGCCGCCATA ACCTCTTTCC TAGACGTCCA
CGCGGACGAG GACGGCGGCG AGGTTGACGA CGCCACCGGC CTCGTCCTCA AACTCAAGTC CTTCTGCCTC CGCATGGATG
CCTTTGGCTT CTGGGCCTTC CTCAGCGCCA AGAAGAAGGA GCTCGATGGC TTACGCGCCG AGGTCCCCGT CGCCCTCGCC
GAATGCGTCG ATCCGGCCAA ATTCGTCCTC GAGGCCATCT CCGAGGTCTT TCCAGTCGAC AAGAGAGGGG AGAAGCCCGG
CCACGACCTA GGCTGGGCCT GCGTCCTTGT ACTCGAGTCT CTGATTCCGG TCGTTGTCGA CCCGGTCATC GGAAAATCGA
GGCTGTTGGT CACCCCCACT GTGAAGGAGC AGGCCACGGA GATAGCGGAG ACTTGGAAGG CCAGCCTGGA GGAGCGTGGC
GGCGCGGAAA ACGTGAAGAC ACCCGACGTC CACACCTTCT TGCAGCACGT GGTTACCTTC GGGATTGTCA AGAACGAGGA
CTTGGATTTG TACCGGAAGC TTGTTATTGC TTCCGCTTGG AGGAAACAGA TGCCGAAGCT CGCGCTTTCG CTTGGTCTTA
CTCAGCAAAT GCCTGATATG ATTGAAGAGT TGATCAGCAA AGGGCAGCAG CTTGATGCAG TTCATTTTAC ATATGAGGTG
GGTCTTGTGG AAAAGTTCCC TCCTGTTCCC TTGTTGAAGT CTTTTCTCAA GGATGCTAAG AAAGTTGCGG CTTCTATTTT
GGAAGATCCT AATAATGCAG GCCGAGCAGC GTACCTAGCT GCAAGGAAAG AGCAGTCTGC ACTCAGGGCT GTGATTAAAT
GCATTGAAGA ATACAAACTT GAGGCTGATT TCCCTCCAGA AAATCTGAAG AAGCGACTTG AACAGTTGGA GAAGGTGAAG
ACAGTGAAGA CCGAGAAAAG GAAACCGGCT GCTGTTCCTG CCAATAAGAG AACTCGAGCA AGCAACAGCA ATGGAGGTCC
AATGCCACCA GCCAAAGCTG GGCGTTTGAC TAATGCGTAT GTATCATCTT TCCCTGCTGC TCCTACATTT GTTAGGTCTC
CATCACACGG GCAATACCCA GCTGCTCTTC CACCATACCC TTCCCCACCC CACATGTATG GCAGCAGAAG TCCCCCGGCA
AATCCTTATG CTGCTTATTC GCCTGAGCCT GCACCAGCTA TTGCAGGGTC TTACCCAGCG GCTCCCATGA ATTATCCTGC
ATATGGTGGC TATGGAAATG TCTTGGCACC CACTTATCAG CAGGCTTACT ACCGATAG

>Vigan.08G064400.01
MGSIPDPGEL SELTQPSFDE FQRQTSLMTS CTLLWKELSD HFSSLEEDLK HKSEALKRKM RTLDTATSDS LRLLDRRETS
LDATLQIALR TLDTRRTAAI TSFLDVHADE DGGEVDDATG LVLKLKSFCL RMDAFGFWAF LSAKKKELDG LRAEVPVALA
ECVDPAKFVL EAISEVFPVD KRGEKPGHDL GWACVLVLES LIPVVVDPVI GKSRLLVTPT VKEQATEIAE TWKASLEERG
GAENVKTPDV HTFLQHVVTF GIVKNEDLDL YRKLVIASAW RKQMPKLALS LGLTQQMPDM IEELISKGQQ LDAVHFTYEV
GLVEKFPPVP LLKSFLKDAK KVAASILEDP NNAGRAAYLA ARKEQSALRA VIKCIEEYKL EADFPPENLK KRLEQLEKVK
TVKTEKRKPA AVPANKRTRA SNSNGGPMPP AKAGRLTNAY VSSFPAAPTF VRSPSHGQYP AALPPYPSPP HMYGSRSPPA
NPYAAYSPEP APAIAGSYPA APMNYPAYGG YGNVLAPTYQ QAYYR*