GBrowse Details

Vigan.08G067300.01

Basic Information:
Name: Vigan.08G067300.01
Multiple alignment
Variant Information
Position: Chr08:5221727..5223917 (- strand)
Length: 2191
Functional Information:
Description: Similar to 8S globulin alpha isoform. [Q198W5, Vigna radiata]
GO: Molecular Function: nutrient reservoir activity (GO:0045735)
InterPro: Cupin 1 (IPR006045)
RmlC-like cupin domain (IPR011051)
RmlC-like jelly roll fold (IPR014710)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6358.33,788.89,3.90,0.28,0.11,22826.60,2.49,3.09
Automatic updates:
Name: NM_001317273 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata beta-conglycinin, beta chain-like (LOC106780193), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:5221727..5221873 (- strand)
Length: 147
Type: three_prime_UTR
Position: Chr08:5221874..5222058 (- strand)
Length: 185
Type: CDS
Position: Chr08:5222193..5222472 (- strand)
Length: 280
Type: CDS
Position: Chr08:5222590..5222889 (- strand)
Length: 300
Type: CDS
Position: Chr08:5222987..5223067 (- strand)
Length: 81
Type: CDS
Position: Chr08:5223150..5223325 (- strand)
Length: 176
Type: CDS
Position: Chr08:5223416..5223758 (- strand)
Length: 343
Type: CDS
Position: Chr08:5223759..5223917 (- strand)
Length: 159
Type: five_prime_UTR


>Vigan.08G067300.01
TGCATGTCAA CCACCGCCCA AATGTCCTTC GCTGTTAACA ACACTCACGT CTCTTCTTTA ACTATAAATA CCCGCAATCT
CTCTCCACCT TTTCATCATT CAGAGTCATC CATCAAAGTA TTGCATTATA ACTCCGCCAA TATTCACTAA TACAATACTA
TGGTGAGAGC GAGGATTCCA CTGCTGCTGT TGCTGGGAAT TCTTTTCCTG GCATCACTTT CTGTCTCCTT CGGCATCGTA
CACCGGGAGC ACCATGAGAG CCGAGAAGAA GTGTCGGTTT CAAGTGGAAA AAATAACCCT TTCTACTTCA ACTCTGACAG
GTGGTTCCGC ACTCTATACA GAAACGAATG GGGTCACATT CGGGTCCTCC AGAGGTTCGA CCAACGCTCC AAACAAATGC
AGAATCTTGA AAACTACCGT GTTGTAGAGT TCAAGTCCAA ACCCAACACC CTCCTTCTTC CTCACCATGC TGATGCCGAT
TTCCTCCTAG TTGTCCTTAA TGGGACAGCC GTACTCACCT TGGTAAACCC TGACGGCAGA GACTCCTACA TTCTTGAGCA
AGGCGATGCT CAGAAAATCT CTGCTGGAAC CACTTTCTTT TTGGTTAACC CTGACGACAA CGAGAATCTC AGAATAATCA
AACTCGCCGT ACCCGTTAAC AACCCTCACA GATTTCAAGA CTTTTTCCTA TCTAGAACAA AAGCCCAACA ATCCTACCTG
CAAGGATTCG GCAAGAATAT TCTAGAGGCC TCCTTCGATA GCGATATGAA GGAGATAAAC AGGGTTCTGT TTGGAGAGGA
GGGACAGCAA CAGCAAGGCG AGGAGAGTCA GCAAGAGGGA GTGATTGTGG AACTTAAAAG GGAACAGATT CGGGAAATGA
CCAAACATGC CAAATCTAGT TCAAGGAAAG CCCTTTCCTC CGAAGATGAA CCACTCAACC TGAGAAACCG CAAACCCATC
TACTCCAACA AACTTGGAAG GTGGTTTGAG ATCACTCCGG AGAAAAACCC CCAACTTAGG GACTTGGACA TGTTCATCAG
TTCTGTGGAT ATGAAAGAGG GAGGTCTTCT TCTGCCACAC TACAATTCTA AGGCCATGGT GATCCTGGTT ATTAATGAAG
GAGAAGCAAA CATTGAACTT GTTGGCCAAA GAGAACAACA GAAACAGCAA GAAGAACAAG AGGAAAGTTG GGAAGTGCAG
AGGTATAGAG CTGAGTTGTC TGAAGACGAT GTATTTATAA TCCCAGCAAC TTATCCGGTT GCCATCAACG CTACCTCCAA
TCTGAATTTC TTTGCTTTCG GCATCAATGC TGAGAACAAC CAGAGGAACT TCCTTGCAGG TGAGAAAGAC AATGTGATAA
GCGAGATACC TACAGAGGTA TTGGATGTTA CGTTCCCTGC GTCTGGTGAG AAGGTAAAGA AGCTGATAAA GAAGCAGAGC
GAATCCCAGT TTGTGGATGC ACAGCCTAAG CAACAGCAAA GGGAGGAGGC GCGTAAGGGA GGAAAGGGTC CATTTGTGTA
CTGAATAAAT ATGAAGTAAA ATGTATGTAT GGTGGAAGAG CTCATATAGA GAGAGCTTGG AAATATGTAT CGGACCATGT
AAACAATAAA TGAGCCCAAC CTGAATAAAC AAATGGAGCA TATATAAATG ATGCTGTGTT TTTTCTTAAC T

>Vigan.08G067300.01
ATGGTGAGAG CGAGGATTCC ACTGCTGCTG TTGCTGGGAA TTCTTTTCCT GGCATCACTT TCTGTCTCCT TCGGCATCGT
ACACCGGGAG CACCATGAGA GCCGAGAAGA AGTGTCGGTT TCAAGTGGAA AAAATAACCC TTTCTACTTC AACTCTGACA
GGTGGTTCCG CACTCTATAC AGAAACGAAT GGGGTCACAT TCGGGTCCTC CAGAGGTTCG ACCAACGCTC CAAACAAATG
CAGAATCTTG AAAACTACCG TGTTGTAGAG TTCAAGTCCA AACCCAACAC CCTCCTTCTT CCTCACCATG CTGATGCCGA
TTTCCTCCTA GTTGTCCTTA ATGGGACAGC CGTACTCACC TTGGTAAACC CTGACGGCAG AGACTCCTAC ATTCTTGAGC
AAGGCGATGC TCAGAAAATC TCTGCTGGAA CCACTTTCTT TTTGGTTAAC CCTGACGACA ACGAGAATCT CAGAATAATC
AAACTCGCCG TACCCGTTAA CAACCCTCAC AGATTTCAAG ACTTTTTCCT ATCTAGAACA AAAGCCCAAC AATCCTACCT
GCAAGGATTC GGCAAGAATA TTCTAGAGGC CTCCTTCGAT AGCGATATGA AGGAGATAAA CAGGGTTCTG TTTGGAGAGG
AGGGACAGCA ACAGCAAGGC GAGGAGAGTC AGCAAGAGGG AGTGATTGTG GAACTTAAAA GGGAACAGAT TCGGGAAATG
ACCAAACATG CCAAATCTAG TTCAAGGAAA GCCCTTTCCT CCGAAGATGA ACCACTCAAC CTGAGAAACC GCAAACCCAT
CTACTCCAAC AAACTTGGAA GGTGGTTTGA GATCACTCCG GAGAAAAACC CCCAACTTAG GGACTTGGAC ATGTTCATCA
GTTCTGTGGA TATGAAAGAG GGAGGTCTTC TTCTGCCACA CTACAATTCT AAGGCCATGG TGATCCTGGT TATTAATGAA
GGAGAAGCAA ACATTGAACT TGTTGGCCAA AGAGAACAAC AGAAACAGCA AGAAGAACAA GAGGAAAGTT GGGAAGTGCA
GAGGTATAGA GCTGAGTTGT CTGAAGACGA TGTATTTATA ATCCCAGCAA CTTATCCGGT TGCCATCAAC GCTACCTCCA
ATCTGAATTT CTTTGCTTTC GGCATCAATG CTGAGAACAA CCAGAGGAAC TTCCTTGCAG GTGAGAAAGA CAATGTGATA
AGCGAGATAC CTACAGAGGT ATTGGATGTT ACGTTCCCTG CGTCTGGTGA GAAGGTAAAG AAGCTGATAA AGAAGCAGAG
CGAATCCCAG TTTGTGGATG CACAGCCTAA GCAACAGCAA AGGGAGGAGG CGCGTAAGGG AGGAAAGGGT CCATTTGTGT
ACTGA

>Vigan.08G067300.01
MVRARIPLLL LLGILFLASL SVSFGIVHRE HHESREEVSV SSGKNNPFYF NSDRWFRTLY RNEWGHIRVL QRFDQRSKQM
QNLENYRVVE FKSKPNTLLL PHHADADFLL VVLNGTAVLT LVNPDGRDSY ILEQGDAQKI SAGTTFFLVN PDDNENLRII
KLAVPVNNPH RFQDFFLSRT KAQQSYLQGF GKNILEASFD SDMKEINRVL FGEEGQQQQG EESQQEGVIV ELKREQIREM
TKHAKSSSRK ALSSEDEPLN LRNRKPIYSN KLGRWFEITP EKNPQLRDLD MFISSVDMKE GGLLLPHYNS KAMVILVINE
GEANIELVGQ REQQKQQEEQ EESWEVQRYR AELSEDDVFI IPATYPVAIN ATSNLNFFAF GINAENNQRN FLAGEKDNVI
SEIPTEVLDV TFPASGEKVK KLIKKQSESQ FVDAQPKQQQ REEARKGGKG PFVY*