GBrowse Details

Vigan.08G067600.01

Basic Information:
Name: Vigan.08G067600.01
Multiple alignment
Variant Information
Position: Chr08:5283867..5288944 (- strand)
Length: 5078
Functional Information:
Description: Similar to Homocysteine S-methyltransferase. [T2DMY3, Phaseolus vulgaris]
GO: Molecular Function: homocysteine S-methyltransferase activity (GO:0008898)
InterPro: Homocysteine S-methyltransferase (IPR003726)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:72.35,15.32,8.25,9.46,9.04,39.45,18.48,5.25
Arabidopsis thaliana homolog: AT3G22740.1
Automatic updates:
Name: NM_001255423 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max homocysteine S-methyltransferase 3-like (LOC100811127), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:5283867..5284161 (- strand)
Length: 295
Type: three_prime_UTR
Position: Chr08:5284162..5284320 (- strand)
Length: 159
Type: CDS
Position: Chr08:5284605..5284676 (- strand)
Length: 72
Type: CDS
Position: Chr08:5285122..5285325 (- strand)
Length: 204
Type: CDS
Position: Chr08:5285563..5285692 (- strand)
Length: 130
Type: CDS
Position: Chr08:5285942..5286168 (- strand)
Length: 227
Type: CDS
Position: Chr08:5286251..5286307 (- strand)
Length: 57
Type: CDS
Position: Chr08:5288580..5288759 (- strand)
Length: 180
Type: CDS
Position: Chr08:5288760..5288944 (- strand)
Length: 185
Type: five_prime_UTR


>Vigan.08G067600.01
CGAAAGATGA GAATCAATAA CCTGTTGGGG TTATAACAGT AATTTCCTAA CTCGTGGAAG CAGAATCGCC GTTGGATATA
AGTTGGCACC TGACAACTTC TTTATCATCC AACAGACAAG TGAGACATCA AAACTCTCTT TTGTTGTTCA TCTTCGGTAC
TAAATATTCA CGCGACGTGA GTGTGATGGG GTTCAAAGGG AAGGAAGCGT CGTCGTTTTT TAGGGATTTT CTTGACGAGT
GTGGTGGCTC CGCCGTCATT GACGGTGGCT TTGCCACTGA ATTAGAACGT CACGGTGCAG ACCTCAATGA CCAACTTTGG
AGTGCCAAAT GCCTTGTTAG CTCATCATCA CATCTTGTCC GGAGGGTTCA CCTAGATTAC CTCGAAGCAG GAGCAAACAT
AATATTAACA GCATCTTATC AGGCCACTAT TAAAGGTTTT GAGGCTAAAG GGTTCTCTAG AGAAGAAGGT GTAACTATGC
TCAGAAGGAG TGTAGAGATT GCACGTGAGG CTCGAGAAAT TTATCATGAT AGGTGTACCA AAGATTCTTC TGACTTTATG
CGAAATGAAA GATATAGGAA ACGTCCCATT TTAATTGCTG CTTCTGTGGG AAGCTATGGA GCGTATTTGG CAGATGGCTC
TGAATATGTT GGGGACTATG GTGATTCTGT TACTGTCCAG ACGCTGAAAG ATTTTCATAG GGAAAGAGTA AAGATTCTTG
TTGATGCTGG AGCTGACTTA ATAGCCTTTG AAACAATTCC AAATAAGCTG GAGGCACAGG CTTATGCTGA ACTTCTCGAC
GAAGAAGGCA TAGAAACTCC TGCGTGGTTT TCTTTTAGTT GCAAGGATGA AAGTAATGTG GTTAGTGGTG ATTCTATCTT
TGAGTGTGCT TCAGTAGCTG ATTCATGCAG ACAAGTTGTT GCAGTTGGAG TTAACTGCAC TGCTCCTAGA TTTATTCATG
GATTGATTTC ATCTATTAAG AAGGCTACCA GTAAACCGGT ACTCGTATAT CCCAACAGTG GAGAGACTTA CATTTCTGAG
AGCAACCAAT GGGTGAAATC AAGTGAGTCA GCAAAGGATG ATTTTGTACC CTACATAGGC AAGTGGCGTG ATGCCGGAGC
TTCTCTTTTT GGTGGCTGCT GCAGGACTAC TCCCAACACT ATCAGAGGCA TAGCTGAGGC AATATATGGG AAAGTTCAAG
ACAAATGTAT GTAACTGATG AAGTATCTTT TTATCTGTGT AATTAAAAAA ACTATAATAA TCCAAACGAG ATGTCTAACT
TTCTGCCTTA AGCTTCCATT TTCTTTCTTG GTATGCACGC ATTTTTGCAC AAGGATACAT AGCATAGAGA ACTTAGGCAG
GAACAAGTGA TCTCTAATAT CTGATTAGTG ACTGATTTAA AAGGGAAGAA TGGTTGTATA AAAGTTGATA AAATCACGAA
CAGTATTTCC TGAGGCGTGT AGATTCATTG TCTTTAAAGA CTTATTCGCG GTGTATTGCG CAAGTCCCC

>Vigan.08G067600.01
ATGGGGTTCA AAGGGAAGGA AGCGTCGTCG TTTTTTAGGG ATTTTCTTGA CGAGTGTGGT GGCTCCGCCG TCATTGACGG
TGGCTTTGCC ACTGAATTAG AACGTCACGG TGCAGACCTC AATGACCAAC TTTGGAGTGC CAAATGCCTT GTTAGCTCAT
CATCACATCT TGTCCGGAGG GTTCACCTAG ATTACCTCGA AGCAGGAGCA AACATAATAT TAACAGCATC TTATCAGGCC
ACTATTAAAG GTTTTGAGGC TAAAGGGTTC TCTAGAGAAG AAGGTGTAAC TATGCTCAGA AGGAGTGTAG AGATTGCACG
TGAGGCTCGA GAAATTTATC ATGATAGGTG TACCAAAGAT TCTTCTGACT TTATGCGAAA TGAAAGATAT AGGAAACGTC
CCATTTTAAT TGCTGCTTCT GTGGGAAGCT ATGGAGCGTA TTTGGCAGAT GGCTCTGAAT ATGTTGGGGA CTATGGTGAT
TCTGTTACTG TCCAGACGCT GAAAGATTTT CATAGGGAAA GAGTAAAGAT TCTTGTTGAT GCTGGAGCTG ACTTAATAGC
CTTTGAAACA ATTCCAAATA AGCTGGAGGC ACAGGCTTAT GCTGAACTTC TCGACGAAGA AGGCATAGAA ACTCCTGCGT
GGTTTTCTTT TAGTTGCAAG GATGAAAGTA ATGTGGTTAG TGGTGATTCT ATCTTTGAGT GTGCTTCAGT AGCTGATTCA
TGCAGACAAG TTGTTGCAGT TGGAGTTAAC TGCACTGCTC CTAGATTTAT TCATGGATTG ATTTCATCTA TTAAGAAGGC
TACCAGTAAA CCGGTACTCG TATATCCCAA CAGTGGAGAG ACTTACATTT CTGAGAGCAA CCAATGGGTG AAATCAAGTG
AGTCAGCAAA GGATGATTTT GTACCCTACA TAGGCAAGTG GCGTGATGCC GGAGCTTCTC TTTTTGGTGG CTGCTGCAGG
ACTACTCCCA ACACTATCAG AGGCATAGCT GAGGCAATAT ATGGGAAAGT TCAAGACAAA TGTATGTAA

>Vigan.08G067600.01
MGFKGKEASS FFRDFLDECG GSAVIDGGFA TELERHGADL NDQLWSAKCL VSSSSHLVRR VHLDYLEAGA NIILTASYQA
TIKGFEAKGF SREEGVTMLR RSVEIAREAR EIYHDRCTKD SSDFMRNERY RKRPILIAAS VGSYGAYLAD GSEYVGDYGD
SVTVQTLKDF HRERVKILVD AGADLIAFET IPNKLEAQAY AELLDEEGIE TPAWFSFSCK DESNVVSGDS IFECASVADS
CRQVVAVGVN CTAPRFIHGL ISSIKKATSK PVLVYPNSGE TYISESNQWV KSSESAKDDF VPYIGKWRDA GASLFGGCCR
TTPNTIRGIA EAIYGKVQDK CM*