GBrowse Details

Vigan.08G068100.01

Basic Information:
Name: Vigan.08G068100.01
Multiple alignment
Variant Information
Position: Chr08:5342652..5345379 (- strand)
Length: 2728
Functional Information:
Description: Similar to 40S ribosomal protein S3a. [V7BBU7, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S3Ae (IPR001593)
Ribosomal protein S3Ae, conserved site (IPR018281)
40S ribosomal protein S1/3, eukaryotes (IPR027500)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:191.48,352.39,147.35,103.83,242.09,265.89,215.80,121.73
Arabidopsis thaliana homolog: AT4G34670.1
Automatic updates:
Name: NM_001252929 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S3a-like (LOC100808747), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254076 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S3a-like (LOC100805519), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254501 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S3a (LOC100813273), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001289223 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S3a (LOC100818730), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:5342652..5342800 (- strand)
Length: 149
Type: three_prime_UTR
Position: Chr08:5342801..5342896 (- strand)
Length: 96
Type: CDS
Position: Chr08:5343381..5343581 (- strand)
Length: 201
Type: CDS
Position: Chr08:5343800..5343985 (- strand)
Length: 186
Type: CDS
Position: Chr08:5344080..5344217 (- strand)
Length: 138
Type: CDS
Position: Chr08:5344713..5344818 (- strand)
Length: 106
Type: CDS
Position: Chr08:5344922..5344980 (- strand)
Length: 59
Type: CDS
Position: Chr08:5344981..5345379 (- strand)
Length: 399
Type: five_prime_UTR


>Vigan.08G068100.01
ATTCAATCAA AATTAAATAT TTTTATAGTT TAAAAACTAA AATTACGCAC AAAAAAGAAA GCCAATTAAA AGAGACCAAA
ATTTTAATTT AGGAAAGAAA TAGCAGAATC GATGGCTTGA TGTCTTTTTT TATGCATTGG GTTAGAAAGA AAGTGTTCGG
CTTCCTAAGA TGGGCCTTAT TATCTTGAGA CGAGGTCCAC GATTTAAAAG CCCAGGTGAC ATTGATCTTA AAGAGCCCAA
GCCCATGCAA TCTTGGCATC AGAAAAACCC TAAATTATTC ATAATGAAGA TAAAAGGAGA GAGGTATATA AAAGGTTAGG
GTTTGAGGTT TATTCGGGTG CCATTGTTGC TCTTGTTGTC ATTCGCAGCT GCTGTCACTC ACACCGCACA CAGTGAGCCA
TGGCCGTTGG AAAGAACAAG CGCATCTCCA AAGGGAAGAA GGGTGGCAAG AAGAAGGCAG CTGATCCCTT TTCCAAGAAG
GATTGGTATG ACATTAAGGC TCCCTCTGTT TTCCAAGTAA AAAATGTTGG CAAAACCCTC GTCAGCCGTA CTCAGGGTAC
CAAGATTGCC TCTGAAGGAC TCAAACATAG AGTCTTTGAG GTCTCATTAG CTGATCTTCA AGGAGATGAG GATCATGCAT
TCAGGAAGAT AAGGCTGAGA GCTGAAGATA TTCAAGGGAA GAATGTCCTG ACGAATTTCT GGGGAATGGA TTTCACCACA
GACAAACTGA GGTCTTTGGT TCGAAAATGG CAAACACTTA TTGAAGCCCA TGTGGATGTG AAGACAACTG ATAGTTACAC
ATTGAGGATG TTTTGTATTG GATTCACCAA GAGAAGAGCT AACCAGGTGA AGAGAACCTG TTATGCCCAA TCAAGCCAGA
TTAGACAGAT ACGTAGGAAG ATGAGAGAGA TCATGACCAA CCAGGCAACA TCCTGTGATT TGAAGGAGTT GGTCCGAAAG
TTTATTCCTG AGATTATTGG AAAAGAAATT GAGAAGGCAA CGTCTAGCAT TTATCCGCTG CAGAACGTGT TTGTCCGAAA
AGTCAAGATT CTTAAAGCTC CTAAGTTTGA TCTTGGGAAA CTGATGGAGG TTCATGGTGA TTACTCAGAA GATGTTGGCA
CAAAGGTAGA CAGACCTGCT GATGAAACAA TTGCAGAGGA ACCCACCGAA ATTGTTGGAG CTTAATTCAG TGATACTGCA
TTCAGCTTGT TGTAGTTTTC TGTTTCCTGA TGTTATCATT GAAAATTAAG TTTAAAACTT CAGTTTAGTG TTTGTGTAAG
CCGAGTAAAC CAGTTTTGTT TTGACAATCA GATATTTTTT GCTCGTAATA CATC

>Vigan.08G068100.01
ATGGCCGTTG GAAAGAACAA GCGCATCTCC AAAGGGAAGA AGGGTGGCAA GAAGAAGGCA GCTGATCCCT TTTCCAAGAA
GGATTGGTAT GACATTAAGG CTCCCTCTGT TTTCCAAGTA AAAAATGTTG GCAAAACCCT CGTCAGCCGT ACTCAGGGTA
CCAAGATTGC CTCTGAAGGA CTCAAACATA GAGTCTTTGA GGTCTCATTA GCTGATCTTC AAGGAGATGA GGATCATGCA
TTCAGGAAGA TAAGGCTGAG AGCTGAAGAT ATTCAAGGGA AGAATGTCCT GACGAATTTC TGGGGAATGG ATTTCACCAC
AGACAAACTG AGGTCTTTGG TTCGAAAATG GCAAACACTT ATTGAAGCCC ATGTGGATGT GAAGACAACT GATAGTTACA
CATTGAGGAT GTTTTGTATT GGATTCACCA AGAGAAGAGC TAACCAGGTG AAGAGAACCT GTTATGCCCA ATCAAGCCAG
ATTAGACAGA TACGTAGGAA GATGAGAGAG ATCATGACCA ACCAGGCAAC ATCCTGTGAT TTGAAGGAGT TGGTCCGAAA
GTTTATTCCT GAGATTATTG GAAAAGAAAT TGAGAAGGCA ACGTCTAGCA TTTATCCGCT GCAGAACGTG TTTGTCCGAA
AAGTCAAGAT TCTTAAAGCT CCTAAGTTTG ATCTTGGGAA ACTGATGGAG GTTCATGGTG ATTACTCAGA AGATGTTGGC
ACAAAGGTAG ACAGACCTGC TGATGAAACA ATTGCAGAGG AACCCACCGA AATTGTTGGA GCTTAA

>Vigan.08G068100.01
MAVGKNKRIS KGKKGGKKKA ADPFSKKDWY DIKAPSVFQV KNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDHA
FRKIRLRAED IQGKNVLTNF WGMDFTTDKL RSLVRKWQTL IEAHVDVKTT DSYTLRMFCI GFTKRRANQV KRTCYAQSSQ
IRQIRRKMRE IMTNQATSCD LKELVRKFIP EIIGKEIEKA TSSIYPLQNV FVRKVKILKA PKFDLGKLME VHGDYSEDVG
TKVDRPADET IAEEPTEIVG A*