GBrowse Details

Vigan.08G069900.01

Basic Information:
Name: Vigan.08G069900.01
Multiple alignment
Variant Information
Position: Chr08:5495057..5498304 (+ strand)
Length: 3248
Functional Information:
Description: Similar to transmembrane emp24 domain-containing protein p24beta3-like. [XP_004496668.1, Cicer arietinum]
GO: Biological Process: transport (GO:0006810)
Cellular Component: integral to membrane (GO:0016021)
InterPro: GOLD (IPR009038)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.37,30.66,38.97,26.87,93.50,94.01,75.15,44.25
Arabidopsis thaliana homolog: AT3G22845.1
Automatic updates:
Name: NM_001251242 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499675 (LOC100499675), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251524 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306668 (LOC100306668), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:5495057..5495325 (+ strand)
Length: 269
Type: five_prime_UTR
Position: Chr08:5495326..5495529 (+ strand)
Length: 204
Type: CDS
Position: Chr08:5496502..5496688 (+ strand)
Length: 187
Type: CDS
Position: Chr08:5496891..5496998 (+ strand)
Length: 108
Type: CDS
Position: Chr08:5497822..5497955 (+ strand)
Length: 134
Type: CDS
Position: Chr08:5497956..5498304 (+ strand)
Length: 349
Type: three_prime_UTR


>Vigan.08G069900.01
GTTCTCTGAT TGGCTAGTGC ACGTACGCAT TTTACACGTC AGCTCTATAA ACGACGGCTC CATCAACCAT AGGGCGCCGT
TTTGTTGTGT TGCATTCGCC GAGGAAGAAA GGACAAAAAG AGAGAGAAAG AAGCAAGCTT CGCCAGAGGG TGTCACAGTC
GATCTTTAAG ATCTGAAAGC GCCTCTTATT TCCCGGCAAC CAAAAATTCT CTTACTTTCA ATTATTTGCT TTCAAAATAA
TAAAACCCTA AGGGAGGGGT GCAAACACAA TGAGAAGCGC CAACATGTGG ACGGTTTTGA TGTGTTTGAT TATGAGTTTA
TTCACTCGCA TTGAATCGCT GTCTGTGACA GTGAACGACG TCGAGTGCGT CTACGAGTAC GTGCTTTACG AGGGAGACAC
CGTTTCGGGG AATTTTGTTG TCGTCGACCA TGACATTTTC TGGAGTTCCG ATCACCCCGG CATTGATTTC ACGGTGACAT
CCCCCGCTGG GAATACTGTC AAAAGTATAA AGGGAACCTC TGGTGACAAG TTTGATTTCA AAGCCCCAGC ACATGGAATG
TATAAATTTT GTTTCCATAA CCCATACTCA ACACCTGAGA CTGTCTCTTT CTACATCCAT GTTGGTCATA TTCCCTCTGA
GCATGACCTT GCCAAAGATG AGCATTTGGA CCCAATTAAT GTTAAAATTG CTGAACTCAG AGAAGCACTA GAGTCTGTTA
CTGCTGAACA AAAGTACTTG AAAGCTCGTG ATGCAAGGCA TCGTCACACG AACGAGAGCA CTCGGAAGCG TGTTGTATTC
TACACAGTAG GAGAGTATTT TCTCTTGGCC GCTGTTAGTG CTCTGCAAGT CCTATACATC AGGCGCCTTT TCAGCAAGTC
AGTGGCATAC AACCGTGTTT GAGTTCCCTT CATTATTAAC CTTATGCTTT CCTTCATTAC CATCAGTATT AGGTTTACAT
GTGCTCTCTA TTTAAAAGTA TGATTTCTTG GTGAACACTT TTTTTACAGA AACACGACCT GTATTTTGGT ACCCAACAAG
ATTTTTAAAT TCCTTAGTTT GAATTTCAAT GGGTTGACAG AAATTAAACC ATGTGAGAAT CGATACTAAG TTTGTAAAAG
GGTAATCTAC AAGTTCTCAA ACGTTTGATG CAAACTTGAA GTACAAGCCT AGTAAGACAT ATTTTGGTAA CTGAACCTAT
ACTGCTTATT TTGATGCGTT TAAGGATTTA TTGTTTCACT TTTGCGTGTT G

>Vigan.08G069900.01
ATGAGAAGCG CCAACATGTG GACGGTTTTG ATGTGTTTGA TTATGAGTTT ATTCACTCGC ATTGAATCGC TGTCTGTGAC
AGTGAACGAC GTCGAGTGCG TCTACGAGTA CGTGCTTTAC GAGGGAGACA CCGTTTCGGG GAATTTTGTT GTCGTCGACC
ATGACATTTT CTGGAGTTCC GATCACCCCG GCATTGATTT CACGGTGACA TCCCCCGCTG GGAATACTGT CAAAAGTATA
AAGGGAACCT CTGGTGACAA GTTTGATTTC AAAGCCCCAG CACATGGAAT GTATAAATTT TGTTTCCATA ACCCATACTC
AACACCTGAG ACTGTCTCTT TCTACATCCA TGTTGGTCAT ATTCCCTCTG AGCATGACCT TGCCAAAGAT GAGCATTTGG
ACCCAATTAA TGTTAAAATT GCTGAACTCA GAGAAGCACT AGAGTCTGTT ACTGCTGAAC AAAAGTACTT GAAAGCTCGT
GATGCAAGGC ATCGTCACAC GAACGAGAGC ACTCGGAAGC GTGTTGTATT CTACACAGTA GGAGAGTATT TTCTCTTGGC
CGCTGTTAGT GCTCTGCAAG TCCTATACAT CAGGCGCCTT TTCAGCAAGT CAGTGGCATA CAACCGTGTT TGA

>Vigan.08G069900.01
MRSANMWTVL MCLIMSLFTR IESLSVTVND VECVYEYVLY EGDTVSGNFV VVDHDIFWSS DHPGIDFTVT SPAGNTVKSI
KGTSGDKFDF KAPAHGMYKF CFHNPYSTPE TVSFYIHVGH IPSEHDLAKD EHLDPINVKI AELREALESV TAEQKYLKAR
DARHRHTNES TRKRVVFYTV GEYFLLAAVS ALQVLYIRRL FSKSVAYNRV *