GBrowse Details

Vigan.08G071000.01

Basic Information:
Name: Vigan.08G071000.01
Multiple alignment
Variant Information
Position: Chr08:5605431..5608462 (- strand)
Length: 3032
Functional Information:
Description: Similar to Uncharacterized protein. [I1NGL5, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: mediator complex (GO:0016592)
Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104)
InterPro: Mediator complex, subunit Med31 (IPR008831)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.98,6.07,7.53,7.08,8.08,8.70,6.57,5.96
Arabidopsis thaliana homolog: AT5G19910.2
Automatic updates:
Name: NM_001248135 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SOH1 domain-containing protein (LOC100527879), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001362426 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SOH1 domain-containing protein (LOC100527879), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:5605431..5605784 (- strand)
Length: 354
Type: three_prime_UTR
Position: Chr08:5605785..5606084 (- strand)
Length: 300
Type: CDS
Position: Chr08:5606769..5606847 (- strand)
Length: 79
Type: CDS
Position: Chr08:5607109..5607205 (- strand)
Length: 97
Type: CDS
Position: Chr08:5607869..5607966 (- strand)
Length: 98
Type: CDS
Position: Chr08:5608229..5608278 (- strand)
Length: 50
Type: CDS
Position: Chr08:5608279..5608462 (- strand)
Length: 184
Type: five_prime_UTR


>Vigan.08G071000.01
AAAAAACGAA CACTTAAATT GGAGGGTGGT TCTAATTCAC TAACGTTGAA TCATCGAATT CATAGATTTG TTGGGTCTGT
TTCTGATTCA AAGGCGAGAG CAAGGTCGTG TATCAGTCCT AACCTCACCA AATTTAGTTT TTGAAACTCC CAGTTGTTCT
TGCAGCTAAG AGAGTACCGA TTCCATGGCC ACTCAAATCG AAAGCGACAA TTCAACCCAT ACTTCTCCAT CATCGCCGAA
GAACACATAC AAAGATCCAG ATGATGGGCG GCAACGGTTT TTGCTTGAAT TGGAGTTTGT TCAGTGCCTT GCCAATCCTA
CCTATATCCA CTATTTGGCT CAGAATCGTT ATTTTGAGGA TGAAGCATTC ATTGGATACT TAAAGTATCT TCAATATTGG
CAGCGCCCTG AATATATTAA ATTTATTATG TATCCTCATT GTCTTTATTT TCTTGAGCTG CTTCAGAATG CAAACTTTCG
CAATGCAATG GCACATCCTA TCAATAAGGA ACTGGCACAT AGACAACAAT TCTACTTCTG GAAGAATTAT AGGAACAATC
GGCTAAAACA CATTTTACCA AGATCACTTC CTGAACCTAG TGCCACATCT GCAGTTCCTG CTCCCCTTTC AACTCCAGCT
CAGGCACCTG CATCTGCACT ACCACCAGTA CCTGCTACAA GCGTTGCTGT CACAGCAACA CCCTCGCAAG CTCCTTCTCC
TATGTCATAC GGTATGCCCC CTGGCTCTGG TCTAGCTAAA AATGACATGA GGAATCCTAC AGTTGACAAT AGAAGGAAGA
GAAAGTGAGT GTTTAATACC TCGTGTAAAT TGATTATAAA AATAGTTCGA TGTGGCTGGA TAAGGAATCA GTATGCTTGA
GAGATGGAAG TAGGGACAAT GATAAAGCAA AGTTGTTATG CAAATTAATT TTGTTGTTAT CTTAAAATAT TAGTTAATAT
TCAGTTGGGC CGACAAGTTC TTCTTGAAAA TCCATACGCA GTTAGTGAAA AATCATTATT TTTATACAAA TAATTTGTGA
AATGATTTTC GATTGAAATA ATGGCTTTGA TGGTTTCTAC TTAAATTTCT TTTGTTATGG TGATCAAAAG GAATGAAAGA
CAGTGCCTTG TACTCTTGCT GAGGATTTTG ATTGAGTAGT CC

>Vigan.08G071000.01
ATGGCCACTC AAATCGAAAG CGACAATTCA ACCCATACTT CTCCATCATC GCCGAAGAAC ACATACAAAG ATCCAGATGA
TGGGCGGCAA CGGTTTTTGC TTGAATTGGA GTTTGTTCAG TGCCTTGCCA ATCCTACCTA TATCCACTAT TTGGCTCAGA
ATCGTTATTT TGAGGATGAA GCATTCATTG GATACTTAAA GTATCTTCAA TATTGGCAGC GCCCTGAATA TATTAAATTT
ATTATGTATC CTCATTGTCT TTATTTTCTT GAGCTGCTTC AGAATGCAAA CTTTCGCAAT GCAATGGCAC ATCCTATCAA
TAAGGAACTG GCACATAGAC AACAATTCTA CTTCTGGAAG AATTATAGGA ACAATCGGCT AAAACACATT TTACCAAGAT
CACTTCCTGA ACCTAGTGCC ACATCTGCAG TTCCTGCTCC CCTTTCAACT CCAGCTCAGG CACCTGCATC TGCACTACCA
CCAGTACCTG CTACAAGCGT TGCTGTCACA GCAACACCCT CGCAAGCTCC TTCTCCTATG TCATACGGTA TGCCCCCTGG
CTCTGGTCTA GCTAAAAATG ACATGAGGAA TCCTACAGTT GACAATAGAA GGAAGAGAAA GTGA

>Vigan.08G071000.01
MATQIESDNS THTSPSSPKN TYKDPDDGRQ RFLLELEFVQ CLANPTYIHY LAQNRYFEDE AFIGYLKYLQ YWQRPEYIKF
IMYPHCLYFL ELLQNANFRN AMAHPINKEL AHRQQFYFWK NYRNNRLKHI LPRSLPEPSA TSAVPAPLST PAQAPASALP
PVPATSVAVT ATPSQAPSPM SYGMPPGSGL AKNDMRNPTV DNRRKRK*