GBrowse Details

Vigan.08G071800.01

Basic Information:
Name: Vigan.08G071800.01
Multiple alignment
Variant Information
Position: Chr08:5676226..5681181 (+ strand)
Length: 4956
Functional Information:
Description: Similar to RNA helicase. [Q9M6R6, Vigna radiata var. radiata]
GO: Cellular Component: nucleus (GO:0005634)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: helicase activity (GO:0004386)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: ATP-dependent helicase activity (GO:0008026)
InterPro: RNA helicase, ATP-dependent, DEAD-box, conserved site (IPR000629)
Helicase, C-terminal (IPR001650)
DNA/RNA helicase, DEAD/DEAH box type, N-terminal (IPR011545)
GUCT (IPR012562)
Helicase, superfamily 1/2, ATP-binding domain (IPR014001)
RNA helicase, DEAD-box type, Q motif (IPR014014)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:308.13,252.59,40.63,46.94,62.76,47.48,57.26,46.73
Arabidopsis thaliana homolog: AT5G62190.1
Automatic updates:
Name: NM_001317297 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata DEAD-box ATP-dependent RNA helicase 7 (LOC106771852), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:5676226..5676410 (+ strand)
Length: 185
Type: five_prime_UTR
Position: Chr08:5676411..5676941 (+ strand)
Length: 531
Type: CDS
Position: Chr08:5677356..5677490 (+ strand)
Length: 135
Type: CDS
Position: Chr08:5677576..5677716 (+ strand)
Length: 141
Type: CDS
Position: Chr08:5677866..5677977 (+ strand)
Length: 112
Type: CDS
Position: Chr08:5678549..5678619 (+ strand)
Length: 71
Type: CDS
Position: Chr08:5678708..5678862 (+ strand)
Length: 155
Type: CDS
Position: Chr08:5678954..5679065 (+ strand)
Length: 112
Type: CDS
Position: Chr08:5679176..5679277 (+ strand)
Length: 102
Type: CDS
Position: Chr08:5679365..5679425 (+ strand)
Length: 61
Type: CDS
Position: Chr08:5679515..5679683 (+ strand)
Length: 169
Type: CDS
Position: Chr08:5679766..5679862 (+ strand)
Length: 97
Type: CDS
Position: Chr08:5679977..5680071 (+ strand)
Length: 95
Type: CDS
Position: Chr08:5680266..5680399 (+ strand)
Length: 134
Type: CDS
Position: Chr08:5680556..5680782 (+ strand)
Length: 227
Type: CDS
Position: Chr08:5680783..5681181 (+ strand)
Length: 399
Type: three_prime_UTR


>Vigan.08G071800.01
GTTTTGAGGT TGGGAAGTGT ATAAGAATGT TTCCATCCCT AAAACCATAA ACCCGAAAAC CTCGTTCGCC GCTTACTCCT
CTTTCTTCTC CTGCTTACGC ACCTCATAGC CACAACCCCA TTCAAGCAGG AGAAAATCTC TCTCTTTCTC TCTCTCTTTC
TCTTTGTCCT TACGCCGCCA TCACCATGCC TTCAGTCTCT CTCTCTGCCA CTGACACCAC CCTCCAAGAA ACCAAGAAGC
TTAGCGCCAA GAAAGCCAAG AACCAATCCC CAACCATTGC AGAGAAGAAG AGTGCCTCCA AACTTCTTTC TGATCCAAAC
ACCCCCGATC CCGACCAAGA TGGGGTTTCG GGGAAGCTCC AGAAGAAGGC GAAGAAGCGT AAGGCTTCAG ACATAGAGGC
TATGGCGGCG ACCAACGATG CCGACGAAGA CACTAGTTCC GAGCTGGTGG AGCCCGAATC TTCTAGAGAA GACGACCACA
AGAAGAAGAA AAAGAAGAAA AAGGTCAAGT CCGAGGAACA GCCTTTGGTG ATGGAAGCAG AGGAAAAAGA AGAGAAGAAG
GAGGATCCTA ATGCGGTCTC CAAATTCAGG ATATCTGAAC CGTTGAGGCT AAAGTTGAAG GAGAAGGGGA TCGAATCCTT
GTTTCCTATT CAGGCCATGA CTTTCGATTT AGTTCTCGAC GGTTCTGATT TGGTTGGTCG GGCTCGCACC GGTCAGGGTA
AAACTCTGGC ATTTGTGCTA CCCATATTGG AGTCTTTAAT AAATGGTCCG ACTAAGTCTT CTAGAAAGAC GGGCTACGGG
AGAACTCCAA GCGTTCTTGT GCTTCTACCA ACTAGGGAAT TGGCTTGTCA GGTGCATGCT GATTTTGAAG TTTATGGTGG
AGCGATGGGA TTGAGTTCTT GTTGTTTGTA TGGTGGAGCT CCATATAACA CTCAAGAAAT TAAGCTTAGG AGAGGTGTTG
ATATTGTAAT TGGCACACCA GGTCGTGTAA AGGATCATAT CGAGAGGGGA AATATAGACC TGAGCCAACT GAAATTTCGT
GTCCTTGATG AAGCAGATGA AATGCTAAGG ATGGGTTTTG TTGAAGATGT TGAGTTGATT CTAGGTAAGG TTGAAAATGT
TAATAAAGTT CAGACTCTTC TCTTCAGCGC TACTTTACCA GACTGGGTTA AACATATTGC TGCACAATTT CTGAAGCCTG
ATAAGAAAAC TGCTGACCTT GTTGGAAATA CAAAAATGAA GGCTAGTACC AATGTGAGGC ATATTGTTCT CCCTTGTTCT
GCTCCTGCCA GGTCCCAACT TATCCCGGAC ATTATTCGCT GTTATAGCAG TGGAGGCCGG ACAATTATAT TTACTGAGAC
AAAGGAGTCT GCTTCTCAGC TTGCAGGGTT GTTACCTGGA GCCAGAGCTC TCCATGGTGA CATACAACAA GCACAACGTG
AGGTTACTCT GTCTGGCTTC AGGTCTGGGA AATTCATGAC ATTAGTTGCT ACAAATGTGG CAGCTCGAGG TCTTGATATA
AATGATGTTC AGTTAATTAT CCAGTGTGAG TTCCCACGGG AGGTAGAGTC CTATATCCAT CGTTCTGGAC GAACAGGAAG
AGCAGGTAAT ACTGGGGTTG CTGTTACCCT TTATGATCCA AAAAGATCTA ATATATCTAA AATAGAAAGA GAGTCCGGTG
TAAAATTTGA GCACATATCT GCCCCTCGGC CTGATGATAT TGCTAAAGCT GTTGGTGGGG AAGCTGCTGA AATGATTACC
CAAGTTTCCG ATAGTGTGAT TCCTGCGTTC AAAGAAACCG CTGAAGAGCT ATTGAAGAGT TCTGGTTTAA CAGTAGTGGA
ATTGCTTGCA AAGGCTCTTG CAAAGGCTGT TGGTTATACC GAAATAAAGC AAAGATCACT TCTCACTTCC ATGGAGAACT
ATGTTACATT GCTTCTTGAA ATTGGGAAAC CAATCTTCAC TCCTTCTTTT GCCTATGGAA TCTTGAGGAG ATTTTTGCCT
GAGGAGAAGG TTGAGGCTGT GAAAGGTCTT TCACTCACTG CTGATGGAAA TGGTGCTGTT TTTGATGTAC CAGCTGAAGA
TTTAAATACA TATCTTAGTG GCCAGGAAAA TGCTGCTAAT GTAAGTCTAG AGGTATTGAA AGCTTTGCCA CGTTTGCAAC
AGAGAGAACA ATCAAGAGGT GGCAGATTTG GTGACGGTGG TGGTCGAGGT GGTGGGAACA GGTTTGGAAG AGGCGGGGGA
GGCAGGAACG GTAGATTTTC AAATGATAGG TTTTCCAATG GTGGTGGAAG AGGTGGTCGT GGAAACTGGG GTGGAAAGAG
ATGGTGAGTT TTCACTCTGC ACTGTCTGGT AGCATTACTG CATGACTGCT TCGTGGAAAA GAAATAGTTG ATGCTGGCTA
GGCTATGGAG GATTCAAATT AAGATGGATT CAAATTAACA TAATCTATGG TTTACTGTTT TGTTATTGAT TCCTCTTTTT
GTATTTTTTA TTCTTTTTGA TGGGGAAGCT TAAGTTTAGG TTTTTAATGT TCTTTAACTT CGACAGGAGA AAGTTTTATG
TGTTAGTATA TTTATATATG CTATATTTTA TACAACATGA ACCAGAAGAG AAGACATTAC CGCGTCTTCT GTTAATGCAC
TGAATACATA ACACAGCTTA CCATAAAATT ACGTTTGTAC CATAGTATTG CGGAAGATAA AATAACATGA TTTTAATTCT
ATAAAA

>Vigan.08G071800.01
ATGCCTTCAG TCTCTCTCTC TGCCACTGAC ACCACCCTCC AAGAAACCAA GAAGCTTAGC GCCAAGAAAG CCAAGAACCA
ATCCCCAACC ATTGCAGAGA AGAAGAGTGC CTCCAAACTT CTTTCTGATC CAAACACCCC CGATCCCGAC CAAGATGGGG
TTTCGGGGAA GCTCCAGAAG AAGGCGAAGA AGCGTAAGGC TTCAGACATA GAGGCTATGG CGGCGACCAA CGATGCCGAC
GAAGACACTA GTTCCGAGCT GGTGGAGCCC GAATCTTCTA GAGAAGACGA CCACAAGAAG AAGAAAAAGA AGAAAAAGGT
CAAGTCCGAG GAACAGCCTT TGGTGATGGA AGCAGAGGAA AAAGAAGAGA AGAAGGAGGA TCCTAATGCG GTCTCCAAAT
TCAGGATATC TGAACCGTTG AGGCTAAAGT TGAAGGAGAA GGGGATCGAA TCCTTGTTTC CTATTCAGGC CATGACTTTC
GATTTAGTTC TCGACGGTTC TGATTTGGTT GGTCGGGCTC GCACCGGTCA GGGTAAAACT CTGGCATTTG TGCTACCCAT
ATTGGAGTCT TTAATAAATG GTCCGACTAA GTCTTCTAGA AAGACGGGCT ACGGGAGAAC TCCAAGCGTT CTTGTGCTTC
TACCAACTAG GGAATTGGCT TGTCAGGTGC ATGCTGATTT TGAAGTTTAT GGTGGAGCGA TGGGATTGAG TTCTTGTTGT
TTGTATGGTG GAGCTCCATA TAACACTCAA GAAATTAAGC TTAGGAGAGG TGTTGATATT GTAATTGGCA CACCAGGTCG
TGTAAAGGAT CATATCGAGA GGGGAAATAT AGACCTGAGC CAACTGAAAT TTCGTGTCCT TGATGAAGCA GATGAAATGC
TAAGGATGGG TTTTGTTGAA GATGTTGAGT TGATTCTAGG TAAGGTTGAA AATGTTAATA AAGTTCAGAC TCTTCTCTTC
AGCGCTACTT TACCAGACTG GGTTAAACAT ATTGCTGCAC AATTTCTGAA GCCTGATAAG AAAACTGCTG ACCTTGTTGG
AAATACAAAA ATGAAGGCTA GTACCAATGT GAGGCATATT GTTCTCCCTT GTTCTGCTCC TGCCAGGTCC CAACTTATCC
CGGACATTAT TCGCTGTTAT AGCAGTGGAG GCCGGACAAT TATATTTACT GAGACAAAGG AGTCTGCTTC TCAGCTTGCA
GGGTTGTTAC CTGGAGCCAG AGCTCTCCAT GGTGACATAC AACAAGCACA ACGTGAGGTT ACTCTGTCTG GCTTCAGGTC
TGGGAAATTC ATGACATTAG TTGCTACAAA TGTGGCAGCT CGAGGTCTTG ATATAAATGA TGTTCAGTTA ATTATCCAGT
GTGAGTTCCC ACGGGAGGTA GAGTCCTATA TCCATCGTTC TGGACGAACA GGAAGAGCAG GTAATACTGG GGTTGCTGTT
ACCCTTTATG ATCCAAAAAG ATCTAATATA TCTAAAATAG AAAGAGAGTC CGGTGTAAAA TTTGAGCACA TATCTGCCCC
TCGGCCTGAT GATATTGCTA AAGCTGTTGG TGGGGAAGCT GCTGAAATGA TTACCCAAGT TTCCGATAGT GTGATTCCTG
CGTTCAAAGA AACCGCTGAA GAGCTATTGA AGAGTTCTGG TTTAACAGTA GTGGAATTGC TTGCAAAGGC TCTTGCAAAG
GCTGTTGGTT ATACCGAAAT AAAGCAAAGA TCACTTCTCA CTTCCATGGA GAACTATGTT ACATTGCTTC TTGAAATTGG
GAAACCAATC TTCACTCCTT CTTTTGCCTA TGGAATCTTG AGGAGATTTT TGCCTGAGGA GAAGGTTGAG GCTGTGAAAG
GTCTTTCACT CACTGCTGAT GGAAATGGTG CTGTTTTTGA TGTACCAGCT GAAGATTTAA ATACATATCT TAGTGGCCAG
GAAAATGCTG CTAATGTAAG TCTAGAGGTA TTGAAAGCTT TGCCACGTTT GCAACAGAGA GAACAATCAA GAGGTGGCAG
ATTTGGTGAC GGTGGTGGTC GAGGTGGTGG GAACAGGTTT GGAAGAGGCG GGGGAGGCAG GAACGGTAGA TTTTCAAATG
ATAGGTTTTC CAATGGTGGT GGAAGAGGTG GTCGTGGAAA CTGGGGTGGA AAGAGATGGT GA

>Vigan.08G071800.01
MPSVSLSATD TTLQETKKLS AKKAKNQSPT IAEKKSASKL LSDPNTPDPD QDGVSGKLQK KAKKRKASDI EAMAATNDAD
EDTSSELVEP ESSREDDHKK KKKKKKVKSE EQPLVMEAEE KEEKKEDPNA VSKFRISEPL RLKLKEKGIE SLFPIQAMTF
DLVLDGSDLV GRARTGQGKT LAFVLPILES LINGPTKSSR KTGYGRTPSV LVLLPTRELA CQVHADFEVY GGAMGLSSCC
LYGGAPYNTQ EIKLRRGVDI VIGTPGRVKD HIERGNIDLS QLKFRVLDEA DEMLRMGFVE DVELILGKVE NVNKVQTLLF
SATLPDWVKH IAAQFLKPDK KTADLVGNTK MKASTNVRHI VLPCSAPARS QLIPDIIRCY SSGGRTIIFT ETKESASQLA
GLLPGARALH GDIQQAQREV TLSGFRSGKF MTLVATNVAA RGLDINDVQL IIQCEFPREV ESYIHRSGRT GRAGNTGVAV
TLYDPKRSNI SKIERESGVK FEHISAPRPD DIAKAVGGEA AEMITQVSDS VIPAFKETAE ELLKSSGLTV VELLAKALAK
AVGYTEIKQR SLLTSMENYV TLLLEIGKPI FTPSFAYGIL RRFLPEEKVE AVKGLSLTAD GNGAVFDVPA EDLNTYLSGQ
ENAANVSLEV LKALPRLQQR EQSRGGRFGD GGGRGGGNRF GRGGGGRNGR FSNDRFSNGG GRGGRGNWGG KRW*