GBrowse Details

Vigan.08G078000.01

Basic Information:
Name: Vigan.08G078000.01
Multiple alignment
Variant Information
Position: Chr08:6325143..6328369 (- strand)
Length: 3227
Functional Information:
Description: Similar to Uncharacterized protein. [I1NGT0, Glycine max]
InterPro: Remorin, C-terminal (IPR005516)
Remorin, N-terminal (IPR005518)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.93,17.87,0.58,2.65,1.47,10.64
Arabidopsis thaliana homolog: AT3G61260.1
Automatic updates:
Name: NM_001249350 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max remorin family protein (LOC100305501), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:6325143..6325468 (- strand)
Length: 326
Type: three_prime_UTR
Position: Chr08:6325469..6325666 (- strand)
Length: 198
Type: CDS
Position: Chr08:6326306..6326387 (- strand)
Length: 82
Type: CDS
Position: Chr08:6326648..6326735 (- strand)
Length: 88
Type: CDS
Position: Chr08:6326824..6326874 (- strand)
Length: 51
Type: CDS
Position: Chr08:6327945..6328119 (- strand)
Length: 175
Type: CDS
Position: Chr08:6328120..6328369 (- strand)
Length: 250
Type: five_prime_UTR


>Vigan.08G078000.01
TGTCTCTGTT GGTGTGCTGT GCCAACTCAT AGGAGGCCAC TTGTACCTAC CACTGTTAGC CACACAGCTA AGATTTTAGA
ATTTGAGTTA AGTTACCTTC CTTCAACCAT AATATCCCAA CTAACTCTTT CCTCTTCCTC AATTCCTCTA CATATATTTG
CATCATACTA TTTTTAACAC TCCCAAACAA CTCACACCTT TTTTCTCATC ACTTTCTGCA GACAAATCTG AGTCACCACT
GTCAGAAAAA ATGACTGAGG AGCAATCCAA AACTGTGTCT GAGAATACTC CTATTACTAC CTCTCACACT CCACCTGAAC
CTGTTGCTCA TGACCCTCCA AAGGAGGATG TGGCTCAGGA GAAATCTGTT ATTCCACAAC CCTCTCCTTT TGCTGATGAC
TCCAAAGCTC TTTTACTTGT TGAGAAGACT AGTGAAGTTG TTGTAGAGAA ACCAATTGAG GGATCTGTGA ACCGAGATGC
TGTCCTTGCG AGAGTTGCAA CAGAGAAGAG GTTGTCACTG ATCAAAGCAT GGGAAGAAAG TGAAAAGTCA AAAGCTGAGA
ACAAGGCTTA CAAAAACATT TCATCAATTT CAGCATGGGA GAACAGTAAG AAAGCTGCAA CGGAGGCTGA ATTGAGAAAG
ATTGAAGAAC AACTGGAGAA GAAAAAGGCA GAATATGGAG AGAAGTTGAA AAACAAAATA GCTACAATCC ACCGAGAAGC
TGAAGAAAAG AGGGCATTTA TTGAGGCCAA AAAAGGGGAA GATTTCTTGA AGGCAGAAGA GACAGCTGCA AAGTACAGGG
CAACTGGAAC AGCCCCAAAG AAACTCTTTG GTTGTTTCTA TTAAGCCTGC TCATTTATAA AAATGTAGTA TTACTATTAT
TATTACTATT GCTATTATTT TCTATGATAG TTCATATCAG TACATGTGTG GTTTGGTTGT CTTTTATTGA GTTTTAGTTC
ATCTTCATTT ATTATTGTGT GCACAGAGAT ATGTTGGTGG TGTGTATACA ACAATTACTG TGTGCATACA AGAAATTGAA
TTATTCAATT TGGGTAATAC CAATTTCTTG TACCATCATG CCACTAACCT TTCTCATTCC CTCACGAGCC CTCCTACCTT
ATTGGACAAT ATGATGGTTG TTGATAAAGG TTCAATTTCA TGACCCAAAA 

>Vigan.08G078000.01
ATGACTGAGG AGCAATCCAA AACTGTGTCT GAGAATACTC CTATTACTAC CTCTCACACT CCACCTGAAC CTGTTGCTCA
TGACCCTCCA AAGGAGGATG TGGCTCAGGA GAAATCTGTT ATTCCACAAC CCTCTCCTTT TGCTGATGAC TCCAAAGCTC
TTTTACTTGT TGAGAAGACT AGTGAAGTTG TTGTAGAGAA ACCAATTGAG GGATCTGTGA ACCGAGATGC TGTCCTTGCG
AGAGTTGCAA CAGAGAAGAG GTTGTCACTG ATCAAAGCAT GGGAAGAAAG TGAAAAGTCA AAAGCTGAGA ACAAGGCTTA
CAAAAACATT TCATCAATTT CAGCATGGGA GAACAGTAAG AAAGCTGCAA CGGAGGCTGA ATTGAGAAAG ATTGAAGAAC
AACTGGAGAA GAAAAAGGCA GAATATGGAG AGAAGTTGAA AAACAAAATA GCTACAATCC ACCGAGAAGC TGAAGAAAAG
AGGGCATTTA TTGAGGCCAA AAAAGGGGAA GATTTCTTGA AGGCAGAAGA GACAGCTGCA AAGTACAGGG CAACTGGAAC
AGCCCCAAAG AAACTCTTTG GTTGTTTCTA TTAA

>Vigan.08G078000.01
MTEEQSKTVS ENTPITTSHT PPEPVAHDPP KEDVAQEKSV IPQPSPFADD SKALLLVEKT SEVVVEKPIE GSVNRDAVLA
RVATEKRLSL IKAWEESEKS KAENKAYKNI SSISAWENSK KAATEAELRK IEEQLEKKKA EYGEKLKNKI ATIHREAEEK
RAFIEAKKGE DFLKAEETAA KYRATGTAPK KLFGCFY*