GBrowse Details

Vigan.08G078200.01

Basic Information:
Name: Vigan.08G078200.01
Multiple alignment
Variant Information
Position: Chr08:6337121..6340435 (- strand)
Length: 3315
Functional Information:
Description: Similar to transmembrane ascorbate ferrireductase 1-like isoform X2. [XP_004496576.1, Cicer arietinum]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Cytochrome b561, eukaryote (IPR004877)
Cytochrome b561/ferric reductase transmembrane (IPR006593)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:203.97,25.35,183.66,252.79,156.50,125.20,220.61,173.87
Arabidopsis thaliana homolog: AT4G25570.1
Automatic updates:
Name: NM_001248069 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306179 (LOC100306179), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250219 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527259 (LOC100527259), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:6337121..6337415 (- strand)
Length: 295
Type: three_prime_UTR
Position: Chr08:6337416..6337712 (- strand)
Length: 297
Type: CDS
Position: Chr08:6337925..6338124 (- strand)
Length: 200
Type: CDS
Position: Chr08:6338229..6338277 (- strand)
Length: 49
Type: CDS
Position: Chr08:6340098..6340241 (- strand)
Length: 144
Type: CDS
Position: Chr08:6340242..6340435 (- strand)
Length: 194
Type: five_prime_UTR


>Vigan.08G078200.01
AGCGGATAAT GTAAAAGATC TAGATGGGGC GCATGATAAG GTCAAATAGG GTGGAGGCTC CTGATATCTT CTTATATACT
AATTGGAGTT TGTTTGAATT CACAGATTGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGT GTTTGTAATA ACCTCCATTG
AAGAGAAGGC AGAGAGAAGA GAAAAGAAGA GAAGATGGGG TTAGGTATAC CTGCTTTTCC CTTGACGATC GTGACTCACG
TTCTGGGCGT GGTTGCCACC GTTCTCGTAT TGGTTTGGCT CGTCAATTTC AGGGGAGGCT TGGCTTGGGA AGATGAAAAC
AAGCAACTCA TCTTCAATAT TCATCCATTT CTTATTGTTT TTGGCCTCAT AGTTCATGGA GGTGAAGCTA TTATAAGTTA
CAAAGCTCTT CCTCTGAAGA AGGAAGTGAA GAAAGTGGTA CACCTTGGTC TTCACGGAGC CGCTTTATCA CTTGGAATAA
TTGGAATTTA TACTGCCTTC AAGTATCACA ATGAAAGTGG GATTGCCAAC CTATACAGTT TGCATTCATG GCTTGGAATT
GGGGTTATTG TCCTCTATGG CATTCAGTGG ATATATGGGT TTGTGATCTT TTTCTACCCT GGTGGGACTC CAGATATTAG
ACGTTTCTCT CTTCCTTGGC ATGCACTGTT TGGGCTCTTT GTGTTTGTCT TGGCTGTGGG AACAGCTACT CTTGGATTTC
TGGAGAAGCT CACTTTCTTG GAGAGCACAG GATTGGATAA GTATGGTTCT GAGGCTTTGC TTGTGAACTT CACTGCTATC
ATCACAATCT TATTTGGTGT CTTTGTTGTG CTATCTGCTT TAGCTGATGC TCCTGCAGCA GCAGATGACT ATGAAGCAAT
ATAAACTTTT GTCTGTATCA TATTTTTATT CTTATGAAAT AATCTCATGT CTGCTATTAG TTTGTGTGTA TTGGGTGTAG
GAAGAAGGAA CCAATTTGTT GTTTGTATTT TTGGGCATAA TAAAGTCTGT GATTTGATCA TCAGTATCAA CACATCAACC
CAAAAGTGTG TGATCAGTCA CTGGTTTACG TAAGGTTTAT TAGTTGTCAA CTTAAACTTG GTCAAATTGC GGCCAAATGT
TGAAAAATCA GTCTGTAATT TTAGTGCATG TTTCTTTTTC TGTCAAGTTT GATCTGAAT

>Vigan.08G078200.01
ATGGGGTTAG GTATACCTGC TTTTCCCTTG ACGATCGTGA CTCACGTTCT GGGCGTGGTT GCCACCGTTC TCGTATTGGT
TTGGCTCGTC AATTTCAGGG GAGGCTTGGC TTGGGAAGAT GAAAACAAGC AACTCATCTT CAATATTCAT CCATTTCTTA
TTGTTTTTGG CCTCATAGTT CATGGAGGTG AAGCTATTAT AAGTTACAAA GCTCTTCCTC TGAAGAAGGA AGTGAAGAAA
GTGGTACACC TTGGTCTTCA CGGAGCCGCT TTATCACTTG GAATAATTGG AATTTATACT GCCTTCAAGT ATCACAATGA
AAGTGGGATT GCCAACCTAT ACAGTTTGCA TTCATGGCTT GGAATTGGGG TTATTGTCCT CTATGGCATT CAGTGGATAT
ATGGGTTTGT GATCTTTTTC TACCCTGGTG GGACTCCAGA TATTAGACGT TTCTCTCTTC CTTGGCATGC ACTGTTTGGG
CTCTTTGTGT TTGTCTTGGC TGTGGGAACA GCTACTCTTG GATTTCTGGA GAAGCTCACT TTCTTGGAGA GCACAGGATT
GGATAAGTAT GGTTCTGAGG CTTTGCTTGT GAACTTCACT GCTATCATCA CAATCTTATT TGGTGTCTTT GTTGTGCTAT
CTGCTTTAGC TGATGCTCCT GCAGCAGCAG ATGACTATGA AGCAATATAA 

>Vigan.08G078200.01
MGLGIPAFPL TIVTHVLGVV ATVLVLVWLV NFRGGLAWED ENKQLIFNIH PFLIVFGLIV HGGEAIISYK ALPLKKEVKK
VVHLGLHGAA LSLGIIGIYT AFKYHNESGI ANLYSLHSWL GIGVIVLYGI QWIYGFVIFF YPGGTPDIRR FSLPWHALFG
LFVFVLAVGT ATLGFLEKLT FLESTGLDKY GSEALLVNFT AIITILFGVF VVLSALADAP AAADDYEAI*