VIGGS:GBrowse

Vigan.08G079100.01

Basic Information:

Name:	Vigan.08G079100.01 Multiple alignment Variant Information
Position:	Chr08:6421871..6424566 (+ strand)
Length:	2696

Functional Information:

Description:	Similar to tubulin beta-1 chain-like. [XP_004496560.1, Cicer arietinum]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: microtubule-based process (GO:0007017)
	Biological Process: protein polymerization (GO:0051258)
	Cellular Component: microtubule (GO:0005874)
	Cellular Component: protein complex (GO:0043234)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: structural constituent of cytoskeleton (GO:0005200)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Tubulin (IPR000217)
	Beta tubulin (IPR002453)
	Tubulin/FtsZ, GTPase domain (IPR003008)
	Tubulin/FtsZ, C-terminal (IPR008280)
	Beta tubulin, autoregulation binding site (IPR013838)
	Tubulin, conserved site (IPR017975)
	Tubulin/FtsZ, 2-layer sandwich domain (IPR018316)
	Tubulin, C-terminal (IPR023123)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:1.63,26.76,103.26,28.97,105.55,173.38,93.37,149.88
Arabidopsis thaliana homolog:	AT1G20010.1, AT1G75780.1, AT2G29550.1, AT4G20890.1, AT5G12250.1, AT5G23860.1, AT5G44340.1, AT5G62690.1, AT5G62700.1

Automatic updates:

Name:	NM_001252709 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max beta-tubulin (TUBB3), mRNA.
PubMed ID:	16307369 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:6421871..6422179 (+ strand)
Length:	309
Type:	five_prime_UTR

Position:	Chr08:6422180..6422573 (+ strand)
Length:	394
Type:	CDS

Position:	Chr08:6423078..6423347 (+ strand)
Length:	270
Type:	CDS

Position:	Chr08:6423465..6424150 (+ strand)
Length:	686
Type:	CDS

Position:	Chr08:6424151..6424566 (+ strand)
Length:	416
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G079100.01
TGAATCAAAC GCCATCGGAC GGTGATAAAT ACAAAGAACA AATAAGCCTC ACCACGGAGG AACCTTTGTT CAGAAGATTC
AAAATTTTCT GTCCGCTTTT CAAATTTTAA ATTCCCCCTT AAATCCAACG GCCTCGTCAA TTCTCCCGTT AACTTCTCAG
GCCCACTTAA CGGCGTTACG GATCTGTCCT ATAAAAAGCT CTTCGTCTTC TTCTCCATCA CAGACGAGGG TTCACGTTCA
CTACTTTCTG CGCTTCACTT CTATATTCCT CCTCGTTGGT GTTTTCTTGA ACTCGTGTTT TCAGCGAAGA TGCGTGAGAT
TCTTCATATC CAGGGTGGGC AATGCGGGAA CCAGATCGGA GCGAAGTTCT GGGAGGTGGT GTGCGCGGAG CACGGGATTG
ATTCGACGGG AAGGTACCAG GGGAACAATG AGTTGCAACT GGAGCGAGTG AATGTGTACT ACAATGAGGC GAGTTGCGGG
AGATTTGTCC CTAGGGCGGT GCTCATGGAT CTGGAGCCAG GGACCATGGA CAGCGTCAGA TCTGGACCAT ACGGCCAGAT
TTTCCGCCCG GATAACTTCG TCTTCGGACA GTCCGGCGCC GGAAACAACT GGGCCAAGGG TCACTATACT GAGGGGGCTG
AGTTAATTGA CTCCGTTCTT GATGTTGTTA GGAAGGAGGC GGAAAACTGT GACTGCCTTC AAGGATTTCA GGTCTGCCAC
TCTCTCGGTG GTGGAACTGG TTCTGGAATG GGAACACTTT TGATCTCGAA GATCAGGGAA GAGTACCCTG ATCGAATGAT
GCTCACATTT TCCGTGTTCC CATCCCCTAA GGTTTCTGAC ACTGTTGTTG AGCCATACAA TGCAACTCTA TCAGTACACC
AACTCGTTGA GAATGCAGAC GAATGCATGG TTTTGGACAA CGAAGCTCTC TATGACATCT GCTTCCGTAC CCTTAAGCTC
ACCACTCCAA GCTTTGGAGA TCTGAATCAC CTAATTTCTG CCACCATGAG TGGTGTAACG TGTTGTCTTC GATTCCCTGG
TCAACTCAAC TCAGATCTTC GCAAACTCGC CGTGAATCTC ATTCCCTTTC CTCGTCTGCA CTTCTTCATG GTAGGGTTTG
CCCCTCTCAC TTCCCGTGGA TCCCAACAGT ACAGGGCTCT CACCGTACCC GAATTGACCC AACAAATGTG GGATGCCAAG
AACATGATGT GTGCAGCTGA TCCTCGCCAT GGTCGTTACT TGACAGCTTC TGCAATGTTC CGTGGTAAGA TGAGCACCAA
GGAGGTCGAC GAGCAAATGA TTAATGTCCA GAACAAGAAC TCATCCTACT TTGTGGAATG GATCCCCAAC AATGTGAAGT
CCACTGTTTG TGATATCCCC CCAACTGGGC TCAAGATGGC ATCAACCTTT ATTGGGAATT CTACATCTAT CCAGGAAATG
TTCAGGAGGG TGAGTGAGCA ATTCACGGCT ATGTTCCGCA GAAAGGCTTT CTTGCACTGG TACACCGGCG AGGGTATGGA
TGAAATGGAG TTTACTGAGG CTGAGAGCAA CATGAATGAC CTTGTCTCGG AGTACCAGCA GTACCAAGAT GCAACTGCGG
ATGATGATGG TTATGAATAT GAAGACGAAG AGGATGTTCA GGAAGACGAG GAATCTTGAG CAGTGGCTGT TGGAGGGGTG
TTCTTGTTTG TGTTTGTTGT GATATTGCGT CGATGTTATG ATTTTATCCC TTTGTCCTGA ATACCTTTTT CGGGGTTTTG
GCTTGTTTTG GGGGCGCTCG CTTCTTTGTG GTTATGGTAG TTTAGGAATT TTATGTCTGC ATGTTTTCTC ATTATTAACA
TTGATCCCCC TTTAATTTCT GGAAGATTGA AACTTAGATG ATATATATTC TTCAAATATT TGGATATTGC TCTTGCTCTT
CTGCTAATGT TTCACTTGTC AAGTTGTGTG AAGGGTGAAA CATTGCGTTG GTTGTTTTAT GATGTCTGAT TATCCAAGTT
ACTTAGCAAA CATAATTTAA GAACGTTATG TTAATTCAGA GTTATGATAA CTCCAGAAGT TTGTATTTTA TCAAA

[show][hide][copy]CDS

>Vigan.08G079100.01
ATGCGTGAGA TTCTTCATAT CCAGGGTGGG CAATGCGGGA ACCAGATCGG AGCGAAGTTC TGGGAGGTGG TGTGCGCGGA
GCACGGGATT GATTCGACGG GAAGGTACCA GGGGAACAAT GAGTTGCAAC TGGAGCGAGT GAATGTGTAC TACAATGAGG
CGAGTTGCGG GAGATTTGTC CCTAGGGCGG TGCTCATGGA TCTGGAGCCA GGGACCATGG ACAGCGTCAG ATCTGGACCA
TACGGCCAGA TTTTCCGCCC GGATAACTTC GTCTTCGGAC AGTCCGGCGC CGGAAACAAC TGGGCCAAGG GTCACTATAC
TGAGGGGGCT GAGTTAATTG ACTCCGTTCT TGATGTTGTT AGGAAGGAGG CGGAAAACTG TGACTGCCTT CAAGGATTTC
AGGTCTGCCA CTCTCTCGGT GGTGGAACTG GTTCTGGAAT GGGAACACTT TTGATCTCGA AGATCAGGGA AGAGTACCCT
GATCGAATGA TGCTCACATT TTCCGTGTTC CCATCCCCTA AGGTTTCTGA CACTGTTGTT GAGCCATACA ATGCAACTCT
ATCAGTACAC CAACTCGTTG AGAATGCAGA CGAATGCATG GTTTTGGACA ACGAAGCTCT CTATGACATC TGCTTCCGTA
CCCTTAAGCT CACCACTCCA AGCTTTGGAG ATCTGAATCA CCTAATTTCT GCCACCATGA GTGGTGTAAC GTGTTGTCTT
CGATTCCCTG GTCAACTCAA CTCAGATCTT CGCAAACTCG CCGTGAATCT CATTCCCTTT CCTCGTCTGC ACTTCTTCAT
GGTAGGGTTT GCCCCTCTCA CTTCCCGTGG ATCCCAACAG TACAGGGCTC TCACCGTACC CGAATTGACC CAACAAATGT
GGGATGCCAA GAACATGATG TGTGCAGCTG ATCCTCGCCA TGGTCGTTAC TTGACAGCTT CTGCAATGTT CCGTGGTAAG
ATGAGCACCA AGGAGGTCGA CGAGCAAATG ATTAATGTCC AGAACAAGAA CTCATCCTAC TTTGTGGAAT GGATCCCCAA
CAATGTGAAG TCCACTGTTT GTGATATCCC CCCAACTGGG CTCAAGATGG CATCAACCTT TATTGGGAAT TCTACATCTA
TCCAGGAAAT GTTCAGGAGG GTGAGTGAGC AATTCACGGC TATGTTCCGC AGAAAGGCTT TCTTGCACTG GTACACCGGC
GAGGGTATGG ATGAAATGGA GTTTACTGAG GCTGAGAGCA ACATGAATGA CCTTGTCTCG GAGTACCAGC AGTACCAAGA
TGCAACTGCG GATGATGATG GTTATGAATA TGAAGACGAA GAGGATGTTC AGGAAGACGA GGAATCTTGA

[show][hide][copy]PROTEIN

>Vigan.08G079100.01
MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGNN ELQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP
YGQIFRPDNF VFGQSGAGNN WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP
DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL
RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM CAADPRHGRY LTASAMFRGK
MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDDGYEYEDE EDVQEDEES*