GBrowse Details

Vigan.08G082000.01

Basic Information:
Name: Vigan.08G082000.01
Multiple alignment
Variant Information
Position: Chr08:6651656..6656435 (+ strand)
Length: 4780
Functional Information:
Description: Similar to Uncharacterized protein. [I1LDP1, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:52.67,33.68,30.58,101.25,33.59,30.60,34.65,37.51
Arabidopsis thaliana homolog: AT4G23430.2
Automatic updates:
Name: NM_001255939 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max WW domain-containing oxidoreductase-like (LOC100796920), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:6651656..6651738 (+ strand)
Length: 83
Type: five_prime_UTR
Position: Chr08:6651739..6651844 (+ strand)
Length: 106
Type: CDS
Position: Chr08:6652531..6652762 (+ strand)
Length: 232
Type: CDS
Position: Chr08:6652945..6653024 (+ strand)
Length: 80
Type: CDS
Position: Chr08:6653481..6653634 (+ strand)
Length: 154
Type: CDS
Position: Chr08:6654258..6654336 (+ strand)
Length: 79
Type: CDS
Position: Chr08:6654631..6654712 (+ strand)
Length: 82
Type: CDS
Position: Chr08:6655645..6655691 (+ strand)
Length: 47
Type: CDS
Position: Chr08:6655897..6656055 (+ strand)
Length: 159
Type: CDS
Position: Chr08:6656056..6656435 (+ strand)
Length: 380
Type: three_prime_UTR


>Vigan.08G082000.01
AGTTTCAGGC AGTGCAACGG TGCCATTTCT CTCTGATAGA TTTTGTCTGT TTGTTTGTGG GAGAGAATCA TAGTCACATA
GAGATGTGGC CATTCAGCAA GAAAGGGGCT TCTGGGTTTT CATCATCATC CACTGCTGAG CAAGTCACTG AAGGTCTTGA
TGGAACTGGT CTCACTGCCA TTGTTACAGG AGCATCCAGT GGTATTGGCA CTGAGACTAC ACGTGTACTT GCTTTGCGAG
GTGTCCATGT GATCATGGGT GCGAGAAATA TGGTTGCTGC TAAAGATGTC AAAGAAACAA TACTTAAGGA GATTCCCTCT
GCAAAAGTTG ATGCCTTGGA ATTAGATCTC AGTTCAATGG ATTCTGTCAA AAAATTTGCA TCTGATTTTA AGTCTTCTGG
TCTTCCGTTG AACATCTTGA TAAACAACGC AGGAATTATG GCATGCCCTT TCAAGCTCTC TGCAGACAAA ATTGAACTAC
AGTTTGCCAC AAATCACATT GGTCACTTTT TATTGACAAA TCTTTTGTTG GACACTATGA AGAAAACTTC ACGTGAAACT
AAGAAAGAAG GAAGAATTGT TAATGTCTCT TCTGAGGCTC ACCGGTTTGC ATATTCTGAA GGAATCCGTT TTGACAAAAT
TAATGATAAG TCAAGTTACA GAGCCTGGGG TGCATATGGG CAGTCAAAGC TTGCCAACCT TTTACATGCG AATGAACTTT
CAAGGCGTCT CAGGGAAGAT GGGGTGGAGA TTTCTGCAAA TTCTCTTCAT CCTGGAGCAA TTACCACCAA TCTTTTCCGT
CATACTCCAA TAAACGGTAT AATTAATGTT ATTGGTAGAC TCGTTTTTAA AAACGTCCCG CAGGGAGCAG CAACAACATG
CTATGTAGCA TTACACCCAC AAGTGAAGGG AGTTAGTGGC AAGTATTTTT CAGACAGTAA TGTTGCCCAA CCAACCTCAC
TTGGGACTGA TGCTGATTTG GCCAAGAAAC TTTGGGATTT CAGCTTGAAA TTGACCAAGT AAAAAACCCA GGTATTATTT
GTCAATGGAG ATAGCAGCTT CAATTATACG ACTTAATGTA ATTTCTATCA AAATTCTCAT CACCTGTTGC ATAGGCATGA
ATTTTAAAGT TCCTACTCCA TTTTACTTGG CACAGAATTT ATACCAGTTT GTATAAGAAT AAAACTTTCT GCACTATTAT
TTTCTCTTGG ATGAGTACCT GGTAATGTAT GGAAGTAGTA GTATTACCAA ATGTTAGTTT CTTGTTCAAT GGTCACTCTC
AAGTTCTATT CTCTTTTAGG TCTATTGAAG TTTTGCTTAG ATTTTTTAGG GAAATGTACT AACTTCCTTA TAATGTTCTT
CACCTTTTAC TGTATTTGGG TTAGTTTAAT CTGAGATGAA AC

>Vigan.08G082000.01
ATGTGGCCAT TCAGCAAGAA AGGGGCTTCT GGGTTTTCAT CATCATCCAC TGCTGAGCAA GTCACTGAAG GTCTTGATGG
AACTGGTCTC ACTGCCATTG TTACAGGAGC ATCCAGTGGT ATTGGCACTG AGACTACACG TGTACTTGCT TTGCGAGGTG
TCCATGTGAT CATGGGTGCG AGAAATATGG TTGCTGCTAA AGATGTCAAA GAAACAATAC TTAAGGAGAT TCCCTCTGCA
AAAGTTGATG CCTTGGAATT AGATCTCAGT TCAATGGATT CTGTCAAAAA ATTTGCATCT GATTTTAAGT CTTCTGGTCT
TCCGTTGAAC ATCTTGATAA ACAACGCAGG AATTATGGCA TGCCCTTTCA AGCTCTCTGC AGACAAAATT GAACTACAGT
TTGCCACAAA TCACATTGGT CACTTTTTAT TGACAAATCT TTTGTTGGAC ACTATGAAGA AAACTTCACG TGAAACTAAG
AAAGAAGGAA GAATTGTTAA TGTCTCTTCT GAGGCTCACC GGTTTGCATA TTCTGAAGGA ATCCGTTTTG ACAAAATTAA
TGATAAGTCA AGTTACAGAG CCTGGGGTGC ATATGGGCAG TCAAAGCTTG CCAACCTTTT ACATGCGAAT GAACTTTCAA
GGCGTCTCAG GGAAGATGGG GTGGAGATTT CTGCAAATTC TCTTCATCCT GGAGCAATTA CCACCAATCT TTTCCGTCAT
ACTCCAATAA ACGGTATAAT TAATGTTATT GGTAGACTCG TTTTTAAAAA CGTCCCGCAG GGAGCAGCAA CAACATGCTA
TGTAGCATTA CACCCACAAG TGAAGGGAGT TAGTGGCAAG TATTTTTCAG ACAGTAATGT TGCCCAACCA ACCTCACTTG
GGACTGATGC TGATTTGGCC AAGAAACTTT GGGATTTCAG CTTGAAATTG ACCAAGTAA

>Vigan.08G082000.01
MWPFSKKGAS GFSSSSTAEQ VTEGLDGTGL TAIVTGASSG IGTETTRVLA LRGVHVIMGA RNMVAAKDVK ETILKEIPSA
KVDALELDLS SMDSVKKFAS DFKSSGLPLN ILINNAGIMA CPFKLSADKI ELQFATNHIG HFLLTNLLLD TMKKTSRETK
KEGRIVNVSS EAHRFAYSEG IRFDKINDKS SYRAWGAYGQ SKLANLLHAN ELSRRLREDG VEISANSLHP GAITTNLFRH
TPINGIINVI GRLVFKNVPQ GAATTCYVAL HPQVKGVSGK YFSDSNVAQP TSLGTDADLA KKLWDFSLKL TK*