GBrowse Details

Vigan.08G082600.01

Basic Information:
Name: Vigan.08G082600.01
Multiple alignment
Variant Information
Position: Chr08:6705519..6709393 (+ strand)
Length: 3875
Functional Information:
Description: Similar to sec-independent protein translocase protein TATB, chloroplastic-like. [XP_003556118.2, Glycine max]
GO: Biological Process: protein secretion (GO:0009306)
Biological Process: protein transport (GO:0015031)
Cellular Component: plasma membrane (GO:0005886)
Cellular Component: membrane (GO:0016020)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: protein transporter activity (GO:0008565)
InterPro: Sec-independent protein translocase protein TatA/B/E (IPR003369)
Twin-arginine translocation protein TatB-like (IPR003998)
Sec-independent protein translocase protein TatA/E (IPR006312)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:22.31,17.45,16.10,39.08,9.86,15.61,11.76,10.20
Arabidopsis thaliana homolog: AT5G52440.1
Automatic updates:
Name: NM_001254653 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100781301 (LOC100781301), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:6705519..6705698 (+ strand)
Length: 180
Type: five_prime_UTR
Position: Chr08:6705699..6705882 (+ strand)
Length: 184
Type: CDS
Position: Chr08:6705956..6706074 (+ strand)
Length: 119
Type: CDS
Position: Chr08:6707990..6708049 (+ strand)
Length: 60
Type: CDS
Position: Chr08:6708141..6708273 (+ strand)
Length: 133
Type: CDS
Position: Chr08:6708787..6708930 (+ strand)
Length: 144
Type: CDS
Position: Chr08:6709036..6709112 (+ strand)
Length: 77
Type: CDS
Position: Chr08:6709113..6709393 (+ strand)
Length: 281
Type: three_prime_UTR


>Vigan.08G082600.01
TAAAAATACG ATCAAATTTC GTTAGGAAGA TTTTGGGAAA ATTGGAAAGA AAATCTTACG ATAAGCAATA CTTTTGAGTT
GACCATGAAT TACAGATAGG ATTGTTTGTG AGGGCTGGGC AGAGAGGCAT CCATCGTTCG ACATTCATCA ATTTCTTAAA
ACAAAAACAG TGTCCCAGAA ATGACACAAT CCGTGGCAAT GGCTTCTTCA TCAATGTTGT GTCCGAGTGC TGTGTCGCAT
ACAAAGTTCC GAGCTTTCCA TCTCTCTTCA ATGTTCACTC CACTGGGTCG AGGCCTTTTC TCGCCGTGGA GTGGTTTAAA
GCATTTGGGC ATCTCTGCTA AACCAAAACC TCTTCTTCAC ATAGCTAGAA AGGGGTGTAA GGGTATGGTG GTTTACGCTT
CTCTCTTTGG GGTTGGAGCT CCTGAAGCTT TGGTGATTGG GGTCGTTGCT TTGTTGGTTT TTGGTCCTAA AGGTCTCGCT
GAGGTTGCTC GAAATCTGGG AAAAACATTG CGTGCGTTTC AACCCACCAT TAGAGAGCTT CAGGACGTTT CAAGGGAATT
TAAGACTACG CTTGAACGGG AGATTGGTCT TGATGACAAT ATAAGTCCAA CGCAGAACAG ATACAACTCT AATGCAAGCA
ATACCAGATC AACATCATCA TCCACAGTTG ACCCTAACGG AACGCCAGAC CCTAAGAATG CATACAGCTC TGAGGAATAT
CTTAAGATTA CAGAGGAACA GCTGAAGGCA TCTGCTGCAC AACAGCAGGA GCAAACACCT CCCAAGGAAC GCGAGGATGA
GCCTCAAATC AAGCCACCTG CTAAGGAAAC AGCCACTACT GTGCCTCCAC CTCCACCGCA GAAGCCAGAA AGTGAGACGT
TGCCTCTGGA TTCATAGGGA TATAGGGTGT AAAGGTAATT AATTCAATTA TCACTTGTGT CCTGAATAAG GCACTACTAT
TCGTATAAGT GATGGGAAGG GTCACGCAAT TTTGTTTCCA GGAAGTCATA TTAGAATTAT GTAACGGAGA AAACCATTCA
CAAGTACTGT GTTTCAGTGT ATTTGTATTG TAGTTAATCA CTAACCATTG CTGGTTATGC GCCATCTTTC TCTTAAAAGT
ATGACAAATA TTTCCTTCAT GTTCTTCAAA ATGAAATATG ATCGAAGTGA AGTTGTTG

>Vigan.08G082600.01
ATGACACAAT CCGTGGCAAT GGCTTCTTCA TCAATGTTGT GTCCGAGTGC TGTGTCGCAT ACAAAGTTCC GAGCTTTCCA
TCTCTCTTCA ATGTTCACTC CACTGGGTCG AGGCCTTTTC TCGCCGTGGA GTGGTTTAAA GCATTTGGGC ATCTCTGCTA
AACCAAAACC TCTTCTTCAC ATAGCTAGAA AGGGGTGTAA GGGTATGGTG GTTTACGCTT CTCTCTTTGG GGTTGGAGCT
CCTGAAGCTT TGGTGATTGG GGTCGTTGCT TTGTTGGTTT TTGGTCCTAA AGGTCTCGCT GAGGTTGCTC GAAATCTGGG
AAAAACATTG CGTGCGTTTC AACCCACCAT TAGAGAGCTT CAGGACGTTT CAAGGGAATT TAAGACTACG CTTGAACGGG
AGATTGGTCT TGATGACAAT ATAAGTCCAA CGCAGAACAG ATACAACTCT AATGCAAGCA ATACCAGATC AACATCATCA
TCCACAGTTG ACCCTAACGG AACGCCAGAC CCTAAGAATG CATACAGCTC TGAGGAATAT CTTAAGATTA CAGAGGAACA
GCTGAAGGCA TCTGCTGCAC AACAGCAGGA GCAAACACCT CCCAAGGAAC GCGAGGATGA GCCTCAAATC AAGCCACCTG
CTAAGGAAAC AGCCACTACT GTGCCTCCAC CTCCACCGCA GAAGCCAGAA AGTGAGACGT TGCCTCTGGA TTCATAG

>Vigan.08G082600.01
MTQSVAMASS SMLCPSAVSH TKFRAFHLSS MFTPLGRGLF SPWSGLKHLG ISAKPKPLLH IARKGCKGMV VYASLFGVGA
PEALVIGVVA LLVFGPKGLA EVARNLGKTL RAFQPTIREL QDVSREFKTT LEREIGLDDN ISPTQNRYNS NASNTRSTSS
STVDPNGTPD PKNAYSSEEY LKITEEQLKA SAAQQQEQTP PKEREDEPQI KPPAKETATT VPPPPPQKPE SETLPLDS*