GBrowse Details

Vigan.08G090500.01

Basic Information:
Name: Vigan.08G090500.01
Multiple alignment
Variant Information
Position: Chr08:7548449..7551173 (- strand)
Length: 2725
Functional Information:
Description: Similar to thioredoxin Y1, chloroplastic. [XP_008237848.1, Prunus mume]
GO: Biological Process: glycerol ether metabolic process (GO:0006662)
Biological Process: cell redox homeostasis (GO:0045454)
Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
InterPro: Thioredoxin (IPR005746)
Thioredoxin-like fold (IPR012336)
Thioredoxin domain (IPR013766)
Thioredoxin, conserved site (IPR017937)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.94,3.10,17.11,42.97,13.32,17.14,16.54,11.66
Arabidopsis thaliana homolog: AT1G76760.1
Automatic updates:
Name: NM_001250114 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max thioredoxin Y1-like protein (LOC100306580), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250979 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500683 (LOC100500683), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:7548449..7548878 (- strand)
Length: 430
Type: three_prime_UTR
Position: Chr08:7548879..7548944 (- strand)
Length: 66
Type: CDS
Position: Chr08:7549911..7550088 (- strand)
Length: 178
Type: CDS
Position: Chr08:7550202..7550290 (- strand)
Length: 89
Type: CDS
Position: Chr08:7550685..7550879 (- strand)
Length: 195
Type: CDS
Position: Chr08:7550880..7551173 (- strand)
Length: 294
Type: five_prime_UTR


>Vigan.08G090500.01
TAGTACGCGG AAATTGTTTT TTATTATTTA ACCAACCGTA ACATTTATAA AAAAAAAACA AAGGAAAAGG AAAAGGAAAA
GAGTGTTGGG ATTGGGAGAG TACGAGTCAG AGCAAAGCAG CAGCTTGGGT TGGACCTTGG AGAGTCCGTT TGTTCCTTCC
CTTTGTTTTC TTTAGATATT TCTTTTTTTT TTTCTGTCGT TTCATTGCAA ACTGATACTT CGGTATCCAA ACACACCTCA
TCTACATTTT CTCATCTCCA GCACAAACAA ACACGTGCAT CTCCTTTCGT TCTCATGGCG ATTTCCGTTT CCGCATCCTC
CGCGATTTCT TCTTTGAGTT CTGAACGTTC TACGCGCTTG CCGTCATCCT TTACCTCTGC ATCTTCTTCC GCCAAACAGT
TCTCGCTGCA ATTCCCCTCG CGCACGCACC TTCTTCGGAT CAGTACTCCA CGCGCTCCTA CTTCCCCGCG GCCACGATTC
CTTCTTCAGG TTCAAGCTAA GAAACAAACC TTTAACTCTT TTGATGATTT GCTTGCCAAT TCTGAAAAGC CTGTATTAGT
TGATTTCTAT GCGACCTGGT GTGGTCCTTG TCAATTCATG GTTCCCATTC TCAATGAAGT AAGCACTCGG CTTAAGGATA
AGATACAGGT GGTGAAGATT GATACTGAGA AATATCCCAG CATTGCTGAC AAATACAGAA TTGAGGCATT GCCAACTTTC
ATCATGTTTA AGGATGGAGA ACCTTATGAT CGTTTTGAGG GAGCATTGAA TGCAGATCAG CTTATTGAAC GCATAGAAGC
CGGTCTGAAG GTTGAACAAT AACCCTAGTA AGTCTCTATT ATTACACTCA TTATTATTGT ATTAAAGATG CTCAAGAACA
TCTCCCCAAT AATCGCTGTC CTCTAAACTC CTTATTGTTT TAATTTTTTC AGCTTTGATG AAGTCAGAAA GAAGCTTGTC
CATTGGAATG TTCGATCACA TACATGATGT GACCGACTTG AGGATCATTA GTTGATTGAA CCTAGACCGA CTTGAGGATC
ACTAGTTGAT TCAACCACAT TAGACATTTT TTGAAGTGAT CATTACCTTT CATAAGTTAA TTTTTGCCCC TTATTTAGAC
TCCGTCCTCT TGATCTATAA TTTATTTTCA TTTTCTGAGG CTTAAAAATA GTGCAATTAT AGGGAGATTA AAGTTGGTCA
ATGTTTGCTA TATACTGATT GAATTGCATG GGAAATGCTT AATGTGATAC AC

>Vigan.08G090500.01
ATGGCGATTT CCGTTTCCGC ATCCTCCGCG ATTTCTTCTT TGAGTTCTGA ACGTTCTACG CGCTTGCCGT CATCCTTTAC
CTCTGCATCT TCTTCCGCCA AACAGTTCTC GCTGCAATTC CCCTCGCGCA CGCACCTTCT TCGGATCAGT ACTCCACGCG
CTCCTACTTC CCCGCGGCCA CGATTCCTTC TTCAGGTTCA AGCTAAGAAA CAAACCTTTA ACTCTTTTGA TGATTTGCTT
GCCAATTCTG AAAAGCCTGT ATTAGTTGAT TTCTATGCGA CCTGGTGTGG TCCTTGTCAA TTCATGGTTC CCATTCTCAA
TGAAGTAAGC ACTCGGCTTA AGGATAAGAT ACAGGTGGTG AAGATTGATA CTGAGAAATA TCCCAGCATT GCTGACAAAT
ACAGAATTGA GGCATTGCCA ACTTTCATCA TGTTTAAGGA TGGAGAACCT TATGATCGTT TTGAGGGAGC ATTGAATGCA
GATCAGCTTA TTGAACGCAT AGAAGCCGGT CTGAAGGTTG AACAATAA

>Vigan.08G090500.01
MAISVSASSA ISSLSSERST RLPSSFTSAS SSAKQFSLQF PSRTHLLRIS TPRAPTSPRP RFLLQVQAKK QTFNSFDDLL
ANSEKPVLVD FYATWCGPCQ FMVPILNEVS TRLKDKIQVV KIDTEKYPSI ADKYRIEALP TFIMFKDGEP YDRFEGALNA
DQLIERIEAG LKVEQ*