VIGGS:GBrowse

Vigan.08G092500.01

Basic Information:

Name:	Vigan.08G092500.01 Multiple alignment Variant Information
Position:	Chr08:7738942..7742378 (+ strand)
Length:	3437

Functional Information:

Description:	Similar to 60S ribosomal protein L3. [V5N8U2, Phaseolus vulgaris]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein L3 (IPR000597)
	Translation protein, beta-barrel domain (IPR009000)
	Ribosomal protein L3, conserved site (IPR019926)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:118.02,384.69,179.41,94.69,280.76,475.71,257.64,146.82
Arabidopsis thaliana homolog:	AT1G43170.1, AT1G61580.1

Automatic updates:

Name:	NM_001289340 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 60S ribosomal protein L3 (LOC100819132), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:7738942..7739288 (+ strand)
Length:	347
Type:	five_prime_UTR

Position:	Chr08:7739289..7739373 (+ strand)
Length:	85
Type:	CDS

Position:	Chr08:7739895..7740005 (+ strand)
Length:	111
Type:	CDS

Position:	Chr08:7740439..7740743 (+ strand)
Length:	305
Type:	CDS

Position:	Chr08:7741179..7741588 (+ strand)
Length:	410
Type:	CDS

Position:	Chr08:7741682..7741940 (+ strand)
Length:	259
Type:	CDS

Position:	Chr08:7741941..7742378 (+ strand)
Length:	438
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G092500.01
CACAAAGGAA GTAGGGTTTT AGTTCAGTGC CTCTCTACTC GGGACTTTGT TCGCCGTAGC AGCAGGAGCA GTCTCAGGTT
CTCCTCTCTC CGATCTCTCT GCTCATTTGT GTTTTCTGGT TTTCCTATTC AGTTATCTGC ATTCCTTGAT ATCTTTCGCT
GCAATTCGTA GCAAAATTTA TGTTCATTTC AATTCTTTGT GGTGTCTGTA CTTTTCCGAA TCCGGAAGCA GTTGCAAGGA
CAAATTGTTT CCTTGGCTTT TGTGTTCAAG TTATCTCCTA TTTTATGCTC ACTTTTTCGT TTGAATGAAT TACTCACGTT
TTTTTATTTG CATTTTCTCT ATATAGGATG TCTCACAGGA AGTTCGAACA CCCAAGGCAC GGGTCTCTGG GATTTCTCCC
CAGGAAGCGT GCTGCTCGTC ACAGGGGAAA AGTGAAGGCA TTCCCTAAGG ATGATCCATC CAAGTCACCC AAGTTGACTG
CATTCTTGGG TTACAAGGCT GGTATGACTC ACATTGTTAG AGAGGTCGAG AAGCCAGGAT CAAAGCTTCA CAAGAAGGAA
ACTTGTGAGC CTGTGACAAT TATTGAGACC CCTCCCATGG TTGTTGTTGG TGTTGTGGGT TATGTGAAAA CTCCCCGTGG
TCTTCGTACC TTGAACACTG TGTGGGCTCA GCACTTGAGC GAGGAACTGA AGCGTAGGTT CTATAAGAAC TGGTGCAAGT
CCAAGAAGAA GGCTTTCACC AAGTACTCAA AGCAGTATGA AACTGACGAG GGGAAGAAGA ACATTGAGAC TCAGCTGGAG
AAACTAAAGA AGTATGCTAC TGTGATTCGT GTTTTGGCTC ACACTCAGAT CAGGAAAATG AAAGGGTTGA AGCAGAAGAA
AGCCCATATC ATGGAAATTC AGGTTAATGG TGGTTCTATT GCACAGAAGG TGGACTTTGC GTACAGTTTC TTTGAGAAAC
AGGTCCCTAT TGATGCTGTG TTCCAGAAAG ATGAGATGAT TGACATCATA GGAGTGACAA AGGGTAAGGG TTATGAGGGT
GTTGTAACTC GTTGGGGTGT TACTCGTCTT CCCCGTAAGA CTCACAGGGG TTTGAGGAAG GTAGCTTGTA TTGGTGCCTG
GCACCCTGCC AGAGTTTCAT TCACTGTTGC CAGGGCTGGT CAGAATGGAT ACCACCACAG GACCGAGTTG AACAAAAAGG
TTTACAAGCT CGGTAAAGCT GGGGATGAGT CTCACTCTGC TCTTACCGAG TTCGATAGGA CTGAGAAAGA CATTACCCCC
ATGGGTGGGT TCCCTCACTA TGGTATTGTG AAGGACGATT TCATCATGGT GAAAGGATGC TGTGTTGGCC CCAAGAAAAG
AGTTCTTACA TTGCGCCAGT CCCTGCTTAA GCAGACTTCT CGTGTTGCCC TTGAGGAGAT CAAACTCAAG TTTATCGATA
CCTCCTCAAA GTTTGGACAC GGTCGCTTCC AGACCACACA GGAGAAGCAG AAGTTCTTTG GACGCCTCAA AGCATAAATA
TGATAATCGG ATGGAAAAGC TGGAACTTAC CTTTTAAAAT TCTATTTGGT TTCCATCGCT CCTTTTAAAC TTTGTAGTGT
TTTTCCTTTT TGGCATTATG GATTGTAGTG TTTCCCTTCG TAATTTCGCT TAACTTTTGT TCGAGGGAGA TTTCTCTATT
AAAAATACTT CAAATTTTGT TTATGATTTT ATTTATATAA TGTCTCAGTT TTAGTTAGTG GTTTGCATAT TATTTTTTGC
TGAAACTTAA TTCATAAGTG ACATGCTAGC CGTTTTCGAC ATTTTGGTAC TGTGGACCGT TTGCTGTATG TTTTTAATTA
GATTTTGATG GACCGTATGT GCTTGAAGAA TTATTTAGTT GATAATTTTA TCCTGAACCT TAGTAGTAAT GTGGAATAAC
CTTGAAGGAG TTGAATCATG TAATGTGGAT TCTAT

[show][hide][copy]CDS

>Vigan.08G092500.01
ATGTCTCACA GGAAGTTCGA ACACCCAAGG CACGGGTCTC TGGGATTTCT CCCCAGGAAG CGTGCTGCTC GTCACAGGGG
AAAAGTGAAG GCATTCCCTA AGGATGATCC ATCCAAGTCA CCCAAGTTGA CTGCATTCTT GGGTTACAAG GCTGGTATGA
CTCACATTGT TAGAGAGGTC GAGAAGCCAG GATCAAAGCT TCACAAGAAG GAAACTTGTG AGCCTGTGAC AATTATTGAG
ACCCCTCCCA TGGTTGTTGT TGGTGTTGTG GGTTATGTGA AAACTCCCCG TGGTCTTCGT ACCTTGAACA CTGTGTGGGC
TCAGCACTTG AGCGAGGAAC TGAAGCGTAG GTTCTATAAG AACTGGTGCA AGTCCAAGAA GAAGGCTTTC ACCAAGTACT
CAAAGCAGTA TGAAACTGAC GAGGGGAAGA AGAACATTGA GACTCAGCTG GAGAAACTAA AGAAGTATGC TACTGTGATT
CGTGTTTTGG CTCACACTCA GATCAGGAAA ATGAAAGGGT TGAAGCAGAA GAAAGCCCAT ATCATGGAAA TTCAGGTTAA
TGGTGGTTCT ATTGCACAGA AGGTGGACTT TGCGTACAGT TTCTTTGAGA AACAGGTCCC TATTGATGCT GTGTTCCAGA
AAGATGAGAT GATTGACATC ATAGGAGTGA CAAAGGGTAA GGGTTATGAG GGTGTTGTAA CTCGTTGGGG TGTTACTCGT
CTTCCCCGTA AGACTCACAG GGGTTTGAGG AAGGTAGCTT GTATTGGTGC CTGGCACCCT GCCAGAGTTT CATTCACTGT
TGCCAGGGCT GGTCAGAATG GATACCACCA CAGGACCGAG TTGAACAAAA AGGTTTACAA GCTCGGTAAA GCTGGGGATG
AGTCTCACTC TGCTCTTACC GAGTTCGATA GGACTGAGAA AGACATTACC CCCATGGGTG GGTTCCCTCA CTATGGTATT
GTGAAGGACG ATTTCATCAT GGTGAAAGGA TGCTGTGTTG GCCCCAAGAA AAGAGTTCTT ACATTGCGCC AGTCCCTGCT
TAAGCAGACT TCTCGTGTTG CCCTTGAGGA GATCAAACTC AAGTTTATCG ATACCTCCTC AAAGTTTGGA CACGGTCGCT
TCCAGACCAC ACAGGAGAAG CAGAAGTTCT TTGGACGCCT CAAAGCATAA

[show][hide][copy]PROTEIN

>Vigan.08G092500.01
MSHRKFEHPR HGSLGFLPRK RAARHRGKVK AFPKDDPSKS PKLTAFLGYK AGMTHIVREV EKPGSKLHKK ETCEPVTIIE
TPPMVVVGVV GYVKTPRGLR TLNTVWAQHL SEELKRRFYK NWCKSKKKAF TKYSKQYETD EGKKNIETQL EKLKKYATVI
RVLAHTQIRK MKGLKQKKAH IMEIQVNGGS IAQKVDFAYS FFEKQVPIDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR
LPRKTHRGLR KVACIGAWHP ARVSFTVARA GQNGYHHRTE LNKKVYKLGK AGDESHSALT EFDRTEKDIT PMGGFPHYGI
VKDDFIMVKG CCVGPKKRVL TLRQSLLKQT SRVALEEIKL KFIDTSSKFG HGRFQTTQEK QKFFGRLKA*