GBrowse Details

Vigan.08G093500.01

Basic Information:
Name: Vigan.08G093500.01
Multiple alignment
Variant Information
Position: Chr08:7821148..7823929 (+ strand)
Length: 2782
Functional Information:
Description: Similar to Peroxidase. [Q43854, Phaseolus angularis]
GO: Biological Process: response to oxidative stress (GO:0006979)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: peroxidase activity (GO:0004601)
Molecular Function: heme binding (GO:0020037)
InterPro: Plant peroxidase (IPR000823)
Haem peroxidase, plant/fungal/bacterial (IPR002016)
Haem peroxidase (IPR010255)
Peroxidases heam-ligand binding site (IPR019793)
Peroxidase, active site (IPR019794)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.26,13.20,53.35,36.74,94.10,27.81,1.63,17.69
Arabidopsis thaliana homolog: AT1G71695.1
Automatic updates:
Name: NM_001329814 NCBI(nuccore)
Organism: Vigna angularis
Description: Vigna angularis peroxidase 12-like (LOC108324140), mRNA.
PubMed ID: 8278494 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:7821148..7821343 (+ strand)
Length: 196
Type: five_prime_UTR
Position: Chr08:7821344..7821601 (+ strand)
Length: 258
Type: CDS
Position: Chr08:7821805..7821999 (+ strand)
Length: 195
Type: CDS
Position: Chr08:7823118..7823738 (+ strand)
Length: 621
Type: CDS
Position: Chr08:7823739..7823929 (+ strand)
Length: 191
Type: three_prime_UTR


>Vigan.08G093500.01
CGTCATTGTC TAACCTTTTG TTTCCTCTGG AGACGTCCTT GAACCAACCA CACGGCTGCT GAGAATCCTC ATAATCTGCA
AAACTCCATT TATTATTCAC ATTCACGCAG TGGTCCATTC TTCAGACTCA CTAATTCTCT ATAAATACTA TACATCCCTT
GCTACATCTG AACCCATTAC CTTTCTACTT TTGATCATGG CTTCTATTTC TTCTAATAAG AATGCTATTT TCAGCTTTCT
TCTCCTCTCT ATCATTCTTT CTGTTTCAGT TATTAAAGTG TGTGAGGCAC AAGCCAGGCC TCCTACTGTC AGAGGTCTAT
CATATACCTT CTATTCCAAA ACTTGCCCTA CGCTTAAATC CATAGTTAGA ACTGAGCTCA AAAAGGTCTT CCAGAGCGAC
ATTGCTCAAG CTGCTGGCTT GCTTCGCCTT CACTTCCATG ACTGCTTTGT TCAGGGATGT GATGGGTCAG TTTTATTGGA
TGGATCTGCA AGTGGGCCGA GTGAGAAAGA TGCGCCACCA AACTTGACTT TGAGAGCTGA AGCTTTTAGG ATCATCGAAA
GGATTCGTGG TCTGTTAGAG AAGAGCTGTG GAAGAGTCGT CTCATGTTCA GACATCACTG CCCTCGCTGC ACGTGATGCT
GTTTTCCTTT CAGGGGGACC AGACTATGAG ATTCCCTTGG GAAGGAGAGA TGGGTTAACC TTTGCCTCTA GACAGGTGAC
ATTAGACAAC CTTCCACCAC CCTCAAGCAA CACCACCACC ATCCTAAACT CCCTCGCCAC CAAAAACCTC GACCCCACCG
ATGTGGTATC CCTCTCTGGT GGCCACACCA TAGGCATAAG TCACTGCAGC TCTTTCAACA ACAGACTCTA CCCTACACAG
GACCCTGTCA TGGACAAAAC CTTTGGCAAA AACCTCAGAC TCACTTGCCC CACCAACACC ACCGACAACA CCACAGTCTT
GGACATTCGA TCCCCCAATA CCTTCGACAA CAAATACTAC GTTGACCTCA TGAACCGACA GGGCCTCTTC ACCTCCGACC
AAGACCTCTA CACCGATAAG AGGACCAGAG GCATTGTCAC CAGCTTTGCC GTGAACCAGA GTCTCTTCTT TGAGAAGTTT
GTGTTCGCCA TGCTCAAGAT GGGTCAGCTC AGTGTGCTCA CGGGAAATCA AGGGGAGATT CGTGCCAACT GCTCCGTGAG
GAATGCCAAC AGCAAGGCCT TCTTGAGTTC CGTCGTGGAA AATGTGGCCC AAGAATTCAT AGAAATGTAA CCGGGTCTTC
TTTGTTGTAT ATGTTATGAC CATGAATAAT GCGTAACCCT TGTTTCTGGA TGATCTAACG TGGTAGGGAA CCGTTCTCTA
ATGTTCCTAG TTATATATAC ATACGTACTT GAGTTGTAAT AAATTTTAAA ATCTGAACAA GAGCTTCTCA TTGGCATGTA
TACAATACAC TTCATCTTAA T

>Vigan.08G093500.01
ATGGCTTCTA TTTCTTCTAA TAAGAATGCT ATTTTCAGCT TTCTTCTCCT CTCTATCATT CTTTCTGTTT CAGTTATTAA
AGTGTGTGAG GCACAAGCCA GGCCTCCTAC TGTCAGAGGT CTATCATATA CCTTCTATTC CAAAACTTGC CCTACGCTTA
AATCCATAGT TAGAACTGAG CTCAAAAAGG TCTTCCAGAG CGACATTGCT CAAGCTGCTG GCTTGCTTCG CCTTCACTTC
CATGACTGCT TTGTTCAGGG ATGTGATGGG TCAGTTTTAT TGGATGGATC TGCAAGTGGG CCGAGTGAGA AAGATGCGCC
ACCAAACTTG ACTTTGAGAG CTGAAGCTTT TAGGATCATC GAAAGGATTC GTGGTCTGTT AGAGAAGAGC TGTGGAAGAG
TCGTCTCATG TTCAGACATC ACTGCCCTCG CTGCACGTGA TGCTGTTTTC CTTTCAGGGG GACCAGACTA TGAGATTCCC
TTGGGAAGGA GAGATGGGTT AACCTTTGCC TCTAGACAGG TGACATTAGA CAACCTTCCA CCACCCTCAA GCAACACCAC
CACCATCCTA AACTCCCTCG CCACCAAAAA CCTCGACCCC ACCGATGTGG TATCCCTCTC TGGTGGCCAC ACCATAGGCA
TAAGTCACTG CAGCTCTTTC AACAACAGAC TCTACCCTAC ACAGGACCCT GTCATGGACA AAACCTTTGG CAAAAACCTC
AGACTCACTT GCCCCACCAA CACCACCGAC AACACCACAG TCTTGGACAT TCGATCCCCC AATACCTTCG ACAACAAATA
CTACGTTGAC CTCATGAACC GACAGGGCCT CTTCACCTCC GACCAAGACC TCTACACCGA TAAGAGGACC AGAGGCATTG
TCACCAGCTT TGCCGTGAAC CAGAGTCTCT TCTTTGAGAA GTTTGTGTTC GCCATGCTCA AGATGGGTCA GCTCAGTGTG
CTCACGGGAA ATCAAGGGGA GATTCGTGCC AACTGCTCCG TGAGGAATGC CAACAGCAAG GCCTTCTTGA GTTCCGTCGT
GGAAAATGTG GCCCAAGAAT TCATAGAAAT GTAA

>Vigan.08G093500.01
MASISSNKNA IFSFLLLSII LSVSVIKVCE AQARPPTVRG LSYTFYSKTC PTLKSIVRTE LKKVFQSDIA QAAGLLRLHF
HDCFVQGCDG SVLLDGSASG PSEKDAPPNL TLRAEAFRII ERIRGLLEKS CGRVVSCSDI TALAARDAVF LSGGPDYEIP
LGRRDGLTFA SRQVTLDNLP PPSSNTTTIL NSLATKNLDP TDVVSLSGGH TIGISHCSSF NNRLYPTQDP VMDKTFGKNL
RLTCPTNTTD NTTVLDIRSP NTFDNKYYVD LMNRQGLFTS DQDLYTDKRT RGIVTSFAVN QSLFFEKFVF AMLKMGQLSV
LTGNQGEIRA NCSVRNANSK AFLSSVVENV AQEFIEM*