GBrowse Details

Vigan.08G093800.01

Basic Information:
Name: Vigan.08G093800.01
Multiple alignment
Variant Information
Position: Chr08:7836561..7841049 (- strand)
Length: 4489
Functional Information:
Description: Similar to Uncharacterized protein. [I1JDC2, Glycine max]
InterPro: Chlorophyll a/b binding protein domain (IPR023329)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:22.23,12.29,31.18,106.64,0.59,14.31,2.26,33.38
Arabidopsis thaliana homolog: AT1G34000.1
Automatic updates:
Name: NM_001254101 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100802195 (LOC100802195), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:7836561..7836880 (- strand)
Length: 320
Type: three_prime_UTR
Position: Chr08:7836881..7836995 (- strand)
Length: 115
Type: CDS
Position: Chr08:7840510..7840916 (- strand)
Length: 407
Type: CDS
Position: Chr08:7840917..7841049 (- strand)
Length: 133
Type: five_prime_UTR


>Vigan.08G093800.01
CTTGTCCACA CACATACTCA CCCTCTCAGT TTGATAAGAC CACATGTCCA ACTCTAATGT TCAAACAAAG ACACAAAAAT
AAAAAATTAC AAAAATAAAA TCCAAGGATT GAGTATCACC AATCCAAGAG AAAATGTCTG TGACATCTTC GTTCCCATGC
ATCAAAATCC CAGCTTGTTC CTCCTCTCCA ACATGCACAT CTTCATCAAA TTCATCCTTT AGATTTTCTT CTTCCAAACC
TTATGCTTCT ATCACTGTAA GGAATTCTCA GACTGAAGGG CCTCTCAGAA GACCGGTGTC TCCTCCTGTT AGGGAACCAT
CTAGTACCAT CCCTCAGCCT CTGAAGCCTT CACCTCCTTC TCAGCCTCCA CCCCAGAAGG CTGCTCCTGT TGTTGGAGAC
GATACGAATG TCATTACATT AGAGTTTCAG AGGCAAAAGG CTAAGGAGCT GCAGGAGTAC TTCAAAAAGA AGAAACTTGA
AGAAGCAGAT CAGGGTCCTT TCTTTGGATT CATAGGAAAA AATGAGATTA GCAATGGAAG ATGGGCAATG TTTGGTTTTG
CTGTTGGATT GTTAACAGAG TATGCAACAG GCTCAGACTT TGTTGATCAA ATAAAGATCC TTCTCTCCAA TTTTGGGATT
GTAGATTTGG AGTGAATACC ACAAGATTAT ATATACTGTC AATAGTTTCT TGTAGCTTAT CCTAGCGCAA ACAATGTTCA
TCAATTTGTT TCATCTTCAT ATATGGCAAG CAATCTTGCT TCTTTGTCTC ACATTTACGA AATAACAAAA GCATCATGAT
TTTCCTTTTC CTTTATGCTC AAACTCTTAT AAATATATGG TAAATTAAGT ACAAACATGT TATGACATGA GTGACTGATA
AGCATGTATC TTAAGTTTGT GATCAATCCA TGTATATATG GAGGAAAATT TCTTAGAAGT AGTTAGTTAA TTTAATGAAT
CTTAATTTTT CGTTA

>Vigan.08G093800.01
ATGTCTGTGA CATCTTCGTT CCCATGCATC AAAATCCCAG CTTGTTCCTC CTCTCCAACA TGCACATCTT CATCAAATTC
ATCCTTTAGA TTTTCTTCTT CCAAACCTTA TGCTTCTATC ACTGTAAGGA ATTCTCAGAC TGAAGGGCCT CTCAGAAGAC
CGGTGTCTCC TCCTGTTAGG GAACCATCTA GTACCATCCC TCAGCCTCTG AAGCCTTCAC CTCCTTCTCA GCCTCCACCC
CAGAAGGCTG CTCCTGTTGT TGGAGACGAT ACGAATGTCA TTACATTAGA GTTTCAGAGG CAAAAGGCTA AGGAGCTGCA
GGAGTACTTC AAAAAGAAGA AACTTGAAGA AGCAGATCAG GGTCCTTTCT TTGGATTCAT AGGAAAAAAT GAGATTAGCA
ATGGAAGATG GGCAATGTTT GGTTTTGCTG TTGGATTGTT AACAGAGTAT GCAACAGGCT CAGACTTTGT TGATCAAATA
AAGATCCTTC TCTCCAATTT TGGGATTGTA GATTTGGAGT GA

>Vigan.08G093800.01
MSVTSSFPCI KIPACSSSPT CTSSSNSSFR FSSSKPYASI TVRNSQTEGP LRRPVSPPVR EPSSTIPQPL KPSPPSQPPP
QKAAPVVGDD TNVITLEFQR QKAKELQEYF KKKKLEEADQ GPFFGFIGKN EISNGRWAMF GFAVGLLTEY ATGSDFVDQI
KILLSNFGIV DLE*