GBrowse Details

Vigan.08G095600.01

Basic Information:
Name: Vigan.08G095600.01
Multiple alignment
Variant Information
Position: Chr08:8029376..8031132 (- strand)
Length: 1757
Functional Information:
Description: Similar to Uncharacterized protein. [I1LDB6, Glycine max]
GO: Biological Process: purine ribonucleoside salvage (GO:0006166)
Biological Process: nucleoside metabolic process (GO:0009116)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: hypoxanthine phosphoribosyltransferase activity (GO:0004422)
InterPro: Phosphoribosyltransferase domain (IPR000836)
Hypoxanthine phosphoribosyl transferase (IPR005904)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.26,21.84,8.32,7.60,26.93,16.20,18.01,7.16
Arabidopsis thaliana homolog: AT1G71750.2
Automatic updates:
Name: NM_001249538 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max hypoxanthine-guanine phosphoribosyltransferase-like (LOC100037484), mRNA.
PubMed ID: 17635220 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:8029376..8029582 (- strand)
Length: 207
Type: three_prime_UTR
Position: Chr08:8029583..8029681 (- strand)
Length: 99
Type: CDS
Position: Chr08:8030163..8030327 (- strand)
Length: 165
Type: CDS
Position: Chr08:8030681..8030986 (- strand)
Length: 306
Type: CDS
Position: Chr08:8030987..8031132 (- strand)
Length: 146
Type: five_prime_UTR


>Vigan.08G095600.01
GTCAGGTTGA TTATTTTAAT AAAATTCTAA TAAATTATAG AAAAGAAGGT TGAAAAAGAT ATCTAACTTT CTTCAAATAG
AAAGAGGAAA CGGTAGAGAA TCTGAAAAAC CCTAGCAGTT GTAAAACATC CCATAAACCC TCTCTAATGA ACACGACCAT
GCATTCCCAC ATTGAGACAA TTCTGTGGAG CGAGGACCAA ATTTCTCGCC GTGTCTCGGA GCTTGCCGCC GAAGTTTCCG
CTGACTTTGC TGGTTGTTCT CGAGCGCCCA TAGTCGTGGG TGTTGCCACG GGTGCCTTCC TCTTCTTGGC AGATTTTGTT
CGCAAAATCG ACTTCTCAGT ATCCGTTGAT TTCGTCCGAG CTGAATCCTA CGGTTCAGGA ACAGAATCCA ATGGCGCACC
CACCATTTCC TTGGATTTGA AGGTCGACAT CAACGCTCGT CATGTCATCT TGGTTGAAGA CATTGTAGAT ACTGGTCATA
CCTTATCTAG AGTCATTAAG CACTTGAAAT CAAAAGGAGC ATCCTCTGTT TCTGTGTGCA CTTTTCTTGA TAAACCTGCA
AGGAGAAAAG TAAATGTTCA GCTGGTGGGT GAAGGAAAAT TCTACCGTGG ATTTGAGTGC CCAGACTGTT TTGTTGTTGG
TTATGGAATG GATTTTGCCG AACACTATAG AAATTTTCCT TACATTGGTG TTTTGAAGCC TGAACTTTAC GAGTGATCTT
ATTTATATCC CTTAGTGAGC ACTTGTCCCA AATGGAACCT TAAGAGTGTT TAACACGGTA CACTTGATTC ACAGATAGAA
CGGAAAATAG AAGAAATGAA TCTGCTTTCT GGTTTCCATG TTTATCACAA AATAAACTGT TTCGGAGCTT TACAGAATTG
TTCACACCAT TATATTATTA TACAGTGTAC TTGAAAACTA GCA

>Vigan.08G095600.01
ATGAACACGA CCATGCATTC CCACATTGAG ACAATTCTGT GGAGCGAGGA CCAAATTTCT CGCCGTGTCT CGGAGCTTGC
CGCCGAAGTT TCCGCTGACT TTGCTGGTTG TTCTCGAGCG CCCATAGTCG TGGGTGTTGC CACGGGTGCC TTCCTCTTCT
TGGCAGATTT TGTTCGCAAA ATCGACTTCT CAGTATCCGT TGATTTCGTC CGAGCTGAAT CCTACGGTTC AGGAACAGAA
TCCAATGGCG CACCCACCAT TTCCTTGGAT TTGAAGGTCG ACATCAACGC TCGTCATGTC ATCTTGGTTG AAGACATTGT
AGATACTGGT CATACCTTAT CTAGAGTCAT TAAGCACTTG AAATCAAAAG GAGCATCCTC TGTTTCTGTG TGCACTTTTC
TTGATAAACC TGCAAGGAGA AAAGTAAATG TTCAGCTGGT GGGTGAAGGA AAATTCTACC GTGGATTTGA GTGCCCAGAC
TGTTTTGTTG TTGGTTATGG AATGGATTTT GCCGAACACT ATAGAAATTT TCCTTACATT GGTGTTTTGA AGCCTGAACT
TTACGAGTGA 

>Vigan.08G095600.01
MNTTMHSHIE TILWSEDQIS RRVSELAAEV SADFAGCSRA PIVVGVATGA FLFLADFVRK IDFSVSVDFV RAESYGSGTE
SNGAPTISLD LKVDINARHV ILVEDIVDTG HTLSRVIKHL KSKGASSVSV CTFLDKPARR KVNVQLVGEG KFYRGFECPD
CFVVGYGMDF AEHYRNFPYI GVLKPELYE*