GBrowse Details

Vigan.08G096100.01

Basic Information:
Name: Vigan.08G096100.01
Multiple alignment
Variant Information
Position: Chr08:8074886..8079825 (- strand)
Length: 4940
Functional Information:
Description: Similar to Ras-related protein Rab7. [Q41640, Vigna aconitifolia]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.59,18.79,23.72,19.90,38.74,17.56,27.32,24.86
Arabidopsis thaliana homolog: AT4G09720.3
Automatic updates:
Name: NM_001248442 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499740 (LOC100499740), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:8074886..8074939 (- strand)
Length: 54
Type: three_prime_UTR
Position: Chr08:8074940..8075006 (- strand)
Length: 67
Type: CDS
Position: Chr08:8078318..8078463 (- strand)
Length: 146
Type: CDS
Position: Chr08:8078541..8078621 (- strand)
Length: 81
Type: CDS
Position: Chr08:8078838..8078984 (- strand)
Length: 147
Type: CDS
Position: Chr08:8079104..8079203 (- strand)
Length: 100
Type: CDS
Position: Chr08:8079435..8079461 (- strand)
Length: 27
Type: CDS
Position: Chr08:8079536..8079588 (- strand)
Length: 53
Type: CDS
Position: Chr08:8079589..8079825 (- strand)
Length: 237
Type: five_prime_UTR


>Vigan.08G096100.01
ATTTCGGTTT TTTTTTAGTC CATGAAATTT ATTCATTGAA GGAAAATTAA TTTTCCCTTT TTCCTTTTTT TTTTGTTTTT
GGCGAAATCT GTTTAGTACA AGAACAGTGC AGAAAGCGAT CGAAAATGGC GTTTGTTTTC CCCTTTTGTG CTCGTAGTTG
ACCTCTAAAT CAAATCCCTC GATAAAGAAG CGAAGGAAGG AACAATCGAG TGCGTTGCGC CCCCACCGTA AGCAGCTATG
TCGTTGCGCA GGCGAACCTT GCTCAAGGTC ATTGTTCTCG GCGATAGCGG AGTGGGAAAG ACCTCGTTGA TGAATCAATA
CGTGCACAAG AAGTTTAGTC AGCAATACAA GGCTACCATT GGTGCTGATT TTGTCACTAA AGAGCTTCAG ATTGACGACA
GACTTGTCAC TCTACAAATA TGGGATACTG CTGGGCAAGA GAGATTCCAA AGTCTCGGGG TTGCATTTTA TAGAGGCGCG
GATTGCTGTG TTCTTGCGTA TGATGTTAAT GTGATGAAAT CTTTCGATAC CCTTGACAAC TGGCATGAGG AGTTTCTCAA
ACAGGCAAAC CCACCCGATC CAAGGTCATT TCCATTTATT TTGCTTGGAA ACAAGATTGA TATTGATGGC GGGAATAGTC
GAGTGGTTTC TGAGAAGAAA GCAAAGGATT GGTGTGCTTC AAAAGGGAAT ATTCCCTACT TTGAAACATC CGCAAAAGAA
GATTTCAATG TTGATGCTGC ATTCCTGTGT ATTGCCAAGG CTGCTCTTGC CAATGAGCAC GAACAAGACA TATATTTTCA
AGGGATTCCT GAGGCAGCAG TTCCAGAAAA TGAACAGAGG AGTGGATGTG CATGCTGATA TGGAGATACT GAATAATTTT
CTGAACTCCC CTTGTTGCTG TAGTTCAAAC TC

>Vigan.08G096100.01
ATGTCGTTGC GCAGGCGAAC CTTGCTCAAG GTCATTGTTC TCGGCGATAG CGGAGTGGGA AAGACCTCGT TGATGAATCA
ATACGTGCAC AAGAAGTTTA GTCAGCAATA CAAGGCTACC ATTGGTGCTG ATTTTGTCAC TAAAGAGCTT CAGATTGACG
ACAGACTTGT CACTCTACAA ATATGGGATA CTGCTGGGCA AGAGAGATTC CAAAGTCTCG GGGTTGCATT TTATAGAGGC
GCGGATTGCT GTGTTCTTGC GTATGATGTT AATGTGATGA AATCTTTCGA TACCCTTGAC AACTGGCATG AGGAGTTTCT
CAAACAGGCA AACCCACCCG ATCCAAGGTC ATTTCCATTT ATTTTGCTTG GAAACAAGAT TGATATTGAT GGCGGGAATA
GTCGAGTGGT TTCTGAGAAG AAAGCAAAGG ATTGGTGTGC TTCAAAAGGG AATATTCCCT ACTTTGAAAC ATCCGCAAAA
GAAGATTTCA ATGTTGATGC TGCATTCCTG TGTATTGCCA AGGCTGCTCT TGCCAATGAG CACGAACAAG ACATATATTT
TCAAGGGATT CCTGAGGCAG CAGTTCCAGA AAATGAACAG AGGAGTGGAT GTGCATGCTG A

>Vigan.08G096100.01
MSLRRRTLLK VIVLGDSGVG KTSLMNQYVH KKFSQQYKAT IGADFVTKEL QIDDRLVTLQ IWDTAGQERF QSLGVAFYRG
ADCCVLAYDV NVMKSFDTLD NWHEEFLKQA NPPDPRSFPF ILLGNKIDID GGNSRVVSEK KAKDWCASKG NIPYFETSAK
EDFNVDAAFL CIAKAALANE HEQDIYFQGI PEAAVPENEQ RSGCAC*