GBrowse Details

Vigan.08G099600.01

Basic Information:
Name: Vigan.08G099600.01
Multiple alignment
Variant Information
Position: Chr08:8367994..8376185 (+ strand)
Length: 8192
Functional Information:
Description: Similar to Uncharacterized protein. [I1NH95, Glycine max]
GO: Biological Process: RNA processing (GO:0006396)
Biological Process: tRNA 3'-end processing (GO:0042780)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: tRNA nucleotidyltransferase activity (GO:0009022)
Molecular Function: nucleotidyltransferase activity (GO:0016779)
InterPro: Poly A polymerase, head domain (IPR002646)
tRNA nucleotidyltransferase (IPR026973)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.28,4.02,1.85,2.07,4.13,2.24,3.67,2.13
Arabidopsis thaliana homolog: AT1G22660.1
Structure :
Position: Chr08:8367994..8368065 (+ strand)
Length: 72
Type: five_prime_UTR
Position: Chr08:8368066..8368398 (+ strand)
Length: 333
Type: CDS
Position: Chr08:8368480..8368610 (+ strand)
Length: 131
Type: CDS
Position: Chr08:8369125..8369242 (+ strand)
Length: 118
Type: CDS
Position: Chr08:8369623..8369678 (+ strand)
Length: 56
Type: CDS
Position: Chr08:8369928..8369977 (+ strand)
Length: 50
Type: CDS
Position: Chr08:8370059..8370157 (+ strand)
Length: 99
Type: CDS
Position: Chr08:8370274..8370383 (+ strand)
Length: 110
Type: CDS
Position: Chr08:8370545..8370672 (+ strand)
Length: 128
Type: CDS
Position: Chr08:8372191..8372257 (+ strand)
Length: 67
Type: CDS
Position: Chr08:8372670..8372753 (+ strand)
Length: 84
Type: CDS
Position: Chr08:8373585..8373647 (+ strand)
Length: 63
Type: CDS
Position: Chr08:8373783..8373927 (+ strand)
Length: 145
Type: CDS
Position: Chr08:8374690..8374839 (+ strand)
Length: 150
Type: CDS
Position: Chr08:8375417..8375514 (+ strand)
Length: 98
Type: CDS
Position: Chr08:8375588..8375692 (+ strand)
Length: 105
Type: CDS
Position: Chr08:8375693..8376185 (+ strand)
Length: 493
Type: three_prime_UTR


>Vigan.08G099600.01
ATGCCATTAT ATAAGACTGA GAAGCGAATG TGAAGTGTTT TCAGAGTATT TAAACACACG AAAGCCCATT TGATGAGAGT
GGCTTTGAAA ACTGCCACAA GGCTTCTTGT GGCGCATCCC GTATCCAATT TGAGTGTGAG GGGTTTTTCA TTCTCACAGT
CGCTTAAATT AACTCCAACG GTTGTTCTTC CTCTCCACTC TCACCGTCCC GCCAAAACCC TCGTTCGAAT CGCCACGCCG
TCGTTTCGGA GTTGCGGTTG CGCACCAATG TCTACGGTTC AGGTCCGTGA CAGAATCGAC ATATCTGATA CCGAGAGAAG
CATCTTTGAT AGGCTTCTTG CCACTCTTCG CCACTTTCAC CTCCAAACTC AGCTCCGTGT CGCGGGTGGC TGGGTTCGCG
ACAAGCTTTT AGGAAAAGAG TGCTATGACA TCGATATCGC TCTGGACAAT ATGATGGGAA CTGAGTTTGT CGACAAGGTT
AGGGAGTACT TGTTGTCCAT CGGCGAAGAT GCACAGGGAG TTTGTGTCAT CGAGAGCAAT CCTGACCAGT CCAAACATTT
GGAAACAGCT AGGATGCGGT TGTTTGATAT GTGGATTGAT TTTGTTAACC TACGTAGTGA AGAATACACT GAGAATAGCC
GCATTCCTTC CAAGCAAAGA ATTGGAACAG CAGAAGAGGA TGCATATAGG AGAGATTTGA CAATTAACAG CTTATTCTAC
AATATCAACA CTGACTCAGT TGAAGATTTC ACTAAGAGAG GGATCCTGGA TCTTAAGTCC GGAAAGATTG TGACACCTTT
ACCCCCAAAA GCCACATTTC TTGATGACCC ATTACGAGTT CTTCGAGCCA TTAGATTTGG TGCTAGATTT GAATTCACCC
TAGACGAAGA TCTGAAAGTA GCTGCTTCAT GTGATGATGT GAAAGATGCT CTGGCCGCTA AAATTAGCAG AGAGCGCATT
GGAACTGAGA TTGATCTTAT GATATCCGGA AATCAGCCTG TCAAAGCAAT GACTTACATT TATGATCTGA CACTCTTTCG
GATTGTATTC AGTCTTTCTC CTGAATTTGA ACCTGCTATT TCAGATGGAT GTGAAAGGCT TTGCATTTCT TGCTTGGATA
CTGCTTGGAA CCTTGTCCAG TTACTTGGAG AGTCAACTTT CACTGCTGAA CAAAAAAGGT TAGCACTTTA TGCTGCTTTG
TTTCTTCCTC TTAGAAATAC CACTTACAGA GAAAAAAAAG CAAAAACGGT TCCTGTTGTC AATCATATTA TCCGGGAGTC
ACTTAAACGA AAAGCTAAGG ATGCGGAAGT GGTGCTTAAT TTACACCAAG CATCACATAA ATTCTTGTCG TTGTTCCCTT
GTCTTACATC TGGTAAGGAT GACCAAGTTG TCGGTCATGA TTGGATGGGA GACTTGGTTG ATGTCCCTGT CTATTCTAGA
GTCAGGGTAC TGACAGGGTT TCTCTTAAGA GAGCTTAAAG ATTTTTGGCG AGTTGCACTG TTGATATCTA CTATACTACA
TCCTATTGAC ATTGAGGATG AGCCCTCCCA GCTGGACATA AGAAGAGATC TGTTTAATAC TGTGGAGAAT GCTATAACCA
AACTCGGCCT TGAGAGGATA TGGGACGTAA AACAATTGAT CAATGGCAAA GATGTTATGA ATACCTTAGG GCTTAAAGGA
GGAGGGCCTC TTGTAAAGGA GTCGCTGGAT AAAGCAATGG CTTGGCAACT TGCCCATCCA TCTGGAACCG CGGAGGATTG
CGTTGAATGG TTGAGAGAAA CCAATTCTAA GCGTGTTAAG TTGCAATGAG ATTGATTGCC TTGAGTGATT GTTTATTCTC
TCATTGTTTC GGATTGAGAG AAGCTGCTTC GCTGAAGGAA ACTAACCCAG CTTGCTGTGT TTTGAGATGA TACAAGGTAC
TTCAAACATT CTTTCCTTGA AGTTGCTATG CCACTCGCAA CTTTTATAAA GTCTGAAGTA ATTCTTGCTG ACTTTTGGGA
TGTAAATTTA TACCCTGGTA AAATGTAATT ATTATTTTTT TTCCGTAATT GCTAGAATGG GTGAAAATAT GATAGTTGTT
CCATGGTATT TATATTCCTA TCAGGAGTCA AGTAACCATT GTATCGTGAT AACACTGTAG CCCGAAAGGC TACATTTTGG
GGAGAACATA ATCCCCCACT TTAAGTGCAA TCATTTGAAT GACGTAAGTT ACTTTGGGTG GTGGATGAAT ATTGATTATC
GCTGTGGCGG AAGGAAAAGT AATTTCATTT TTCTTATTTA TAAAAGTTAT AAAAACAGGA AT

>Vigan.08G099600.01
ATGAGAGTGG CTTTGAAAAC TGCCACAAGG CTTCTTGTGG CGCATCCCGT ATCCAATTTG AGTGTGAGGG GTTTTTCATT
CTCACAGTCG CTTAAATTAA CTCCAACGGT TGTTCTTCCT CTCCACTCTC ACCGTCCCGC CAAAACCCTC GTTCGAATCG
CCACGCCGTC GTTTCGGAGT TGCGGTTGCG CACCAATGTC TACGGTTCAG GTCCGTGACA GAATCGACAT ATCTGATACC
GAGAGAAGCA TCTTTGATAG GCTTCTTGCC ACTCTTCGCC ACTTTCACCT CCAAACTCAG CTCCGTGTCG CGGGTGGCTG
GGTTCGCGAC AAGCTTTTAG GAAAAGAGTG CTATGACATC GATATCGCTC TGGACAATAT GATGGGAACT GAGTTTGTCG
ACAAGGTTAG GGAGTACTTG TTGTCCATCG GCGAAGATGC ACAGGGAGTT TGTGTCATCG AGAGCAATCC TGACCAGTCC
AAACATTTGG AAACAGCTAG GATGCGGTTG TTTGATATGT GGATTGATTT TGTTAACCTA CGTAGTGAAG AATACACTGA
GAATAGCCGC ATTCCTTCCA AGCAAAGAAT TGGAACAGCA GAAGAGGATG CATATAGGAG AGATTTGACA ATTAACAGCT
TATTCTACAA TATCAACACT GACTCAGTTG AAGATTTCAC TAAGAGAGGG ATCCTGGATC TTAAGTCCGG AAAGATTGTG
ACACCTTTAC CCCCAAAAGC CACATTTCTT GATGACCCAT TACGAGTTCT TCGAGCCATT AGATTTGGTG CTAGATTTGA
ATTCACCCTA GACGAAGATC TGAAAGTAGC TGCTTCATGT GATGATGTGA AAGATGCTCT GGCCGCTAAA ATTAGCAGAG
AGCGCATTGG AACTGAGATT GATCTTATGA TATCCGGAAA TCAGCCTGTC AAAGCAATGA CTTACATTTA TGATCTGACA
CTCTTTCGGA TTGTATTCAG TCTTTCTCCT GAATTTGAAC CTGCTATTTC AGATGGATGT GAAAGGCTTT GCATTTCTTG
CTTGGATACT GCTTGGAACC TTGTCCAGTT ACTTGGAGAG TCAACTTTCA CTGCTGAACA AAAAAGGTTA GCACTTTATG
CTGCTTTGTT TCTTCCTCTT AGAAATACCA CTTACAGAGA AAAAAAAGCA AAAACGGTTC CTGTTGTCAA TCATATTATC
CGGGAGTCAC TTAAACGAAA AGCTAAGGAT GCGGAAGTGG TGCTTAATTT ACACCAAGCA TCACATAAAT TCTTGTCGTT
GTTCCCTTGT CTTACATCTG GTAAGGATGA CCAAGTTGTC GGTCATGATT GGATGGGAGA CTTGGTTGAT GTCCCTGTCT
ATTCTAGAGT CAGGGTACTG ACAGGGTTTC TCTTAAGAGA GCTTAAAGAT TTTTGGCGAG TTGCACTGTT GATATCTACT
ATACTACATC CTATTGACAT TGAGGATGAG CCCTCCCAGC TGGACATAAG AAGAGATCTG TTTAATACTG TGGAGAATGC
TATAACCAAA CTCGGCCTTG AGAGGATATG GGACGTAAAA CAATTGATCA ATGGCAAAGA TGTTATGAAT ACCTTAGGGC
TTAAAGGAGG AGGGCCTCTT GTAAAGGAGT CGCTGGATAA AGCAATGGCT TGGCAACTTG CCCATCCATC TGGAACCGCG
GAGGATTGCG TTGAATGGTT GAGAGAAACC AATTCTAAGC GTGTTAAGTT GCAATGA

>Vigan.08G099600.01
MRVALKTATR LLVAHPVSNL SVRGFSFSQS LKLTPTVVLP LHSHRPAKTL VRIATPSFRS CGCAPMSTVQ VRDRIDISDT
ERSIFDRLLA TLRHFHLQTQ LRVAGGWVRD KLLGKECYDI DIALDNMMGT EFVDKVREYL LSIGEDAQGV CVIESNPDQS
KHLETARMRL FDMWIDFVNL RSEEYTENSR IPSKQRIGTA EEDAYRRDLT INSLFYNINT DSVEDFTKRG ILDLKSGKIV
TPLPPKATFL DDPLRVLRAI RFGARFEFTL DEDLKVAASC DDVKDALAAK ISRERIGTEI DLMISGNQPV KAMTYIYDLT
LFRIVFSLSP EFEPAISDGC ERLCISCLDT AWNLVQLLGE STFTAEQKRL ALYAALFLPL RNTTYREKKA KTVPVVNHII
RESLKRKAKD AEVVLNLHQA SHKFLSLFPC LTSGKDDQVV GHDWMGDLVD VPVYSRVRVL TGFLLRELKD FWRVALLIST
ILHPIDIEDE PSQLDIRRDL FNTVENAITK LGLERIWDVK QLINGKDVMN TLGLKGGGPL VKESLDKAMA WQLAHPSGTA
EDCVEWLRET NSKRVKLQ*