GBrowse Details

Vigan.08G099700.01

Basic Information:
Name: Vigan.08G099700.01
Multiple alignment
Variant Information
Position: Chr08:8386146..8390725 (+ strand)
Length: 4580
Functional Information:
Description: Similar to Uncharacterized protein. [I1LD87, Glycine max]
GO: Biological Process: glycerol ether metabolic process (GO:0006662)
Biological Process: cell redox homeostasis (GO:0045454)
Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
InterPro: Thioredoxin (IPR005746)
Thioredoxin-like fold (IPR012336)
Thioredoxin domain (IPR013766)
Thioredoxin, conserved site (IPR017937)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:22.42,9.26,18.65,15.29,25.71,20.96,45.03,20.68
Arabidopsis thaliana homolog: AT1G35620.1
Automatic updates:
Name: LC158001 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max pdil7 mRNA for PDIL7, complete cds, cultivar: Jack.
PubMed ID: 27960051 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:8386146..8386358 (+ strand)
Length: 213
Type: five_prime_UTR
Position: Chr08:8386359..8386559 (+ strand)
Length: 201
Type: CDS
Position: Chr08:8387205..8387308 (+ strand)
Length: 104
Type: CDS
Position: Chr08:8387466..8387836 (+ strand)
Length: 371
Type: CDS
Position: Chr08:8388543..8388844 (+ strand)
Length: 302
Type: CDS
Position: Chr08:8390124..8390441 (+ strand)
Length: 318
Type: CDS
Position: Chr08:8390442..8390725 (+ strand)
Length: 284
Type: three_prime_UTR


>Vigan.08G099700.01
GCCATGGTAA GGTCGTAATT TGCATAGTAA AGTGAAATTA AGTTTTAGTT TTAATCTAAT CCCACTTTGT GATCCGATCT
GATCCATGAG TAATGAAAAT TAAGCATGCA AAGTAGGAAA TAGAGGTTAG GAGGTTGAAA GGCGGAAAAC AGAGTTTTAA
GTGTTGTGTT GGGTCGTGTC GTGTTGGGAT CCGACACAAA CAAACGAGAG AAGATGACGA TGAGGGTTTC GGTTGTTTTA
AGTGTTCTGT TCTTGATCCA GTTTTGGCCT GGGGAAGCTG AGAAATTTTC GGTGGATGGA AAGGTTTTGA TTTTGGACGA
CTCCAACTTC GATTCCGCCA TAGCTTCCTT TGATCACATC TTGGTTGACT TTTACGCTCC CTGGTGTGGT CACTGCAAGC
GTCTTGCTCC CGAGTTAGAT GCAGCTGCGC CTGTACTTGC AACCTTGAAC AAACCCATTG TCATTGCAAA AGTAGATGCA
GACAAACATA CCAGCCTTGC AAAAAAATAT GATGTTGATG CATATCCAAC CATTTTGCTG TTTAATCATG GCATCCCCAC
CGAATACCGT GGACCAAGGA AGGCAGATTT ACTCGTTAGA TATCTGAAGA AGTTTGCTGC TTCTGATGTT TCCATTCTTG
ATTCAGATTC TGCCGTGAAT ACATTCGTTG CAGAAGCTGG ACCTTTTTTC CCCATTTTTA TAGGTTTCGG TTTGAAAAAC
ACGATAATAG AAAAGTTTGG CATAAAGTAC AAGAAAAATG CATGGTTTTC TGTGGCAAAG GACTTTTCAG AGGATCTCAT
GGTATTGTAT GACTTTGATA AGATTCCTGC ATTGGTTTCC CTGAATCCAC AGTACAATGA GCGGAACACA TTCTACGGAC
CCTTTGAAGA TGAATTTTTG GAAGATTTTG TTAAACAAAA CCTGATGCCT CTGGTCGTGC CGATATCCTA CGAAACACTT
AAGTTGGTGA AAGCAGATGG TAGGAAAGTA GTTTTGACCA TTGTTGAAGA TGAAGATGAA GAAAGATCAA GAGAATTGAC
TAAGTTATTG AAGGCTGCTG CATCTGCTAA TCGTGACTTA GTATTTGGTT ATGTTGGAGT CAAACAAATG GAAGAATTTG
CTGAGCAGTT TGATATTAGT ACTAAACTAC CAAAAATGGT GGTTTGGGAT AAAAGTGATG ATTACCTTTC AGTTGTTGAT
TCAGAAAGTA TTGAGGGGGA GGATCAGGCA TCTCAAATCA CTAAATTTCT GGAAGGATAC AGGGAAGGAA GAACCATAAA
CAAAACATTC AGTGGACCTT CGCTGATGCA ATTCATTCAT CGGTCTTTTG ACATTAGAAT GGTATACATA ATTGTTTTTG
TTGTGGCATT ACTGATACTT ATTCAGAGCT TCAGTAAAGG AGGTGATGAG TACCATGCTG TACCAAATCA AGTTCAAGTT
GATCGTGCAA GCAGTTCTGT TTCAGAAGCT GAAATCAAAG AGTATAAACC AGGTGACAAG GAAGACTAAA TTAGCATGTA
GAATGATAAT CGGTGCACGT GAGCTTCTAG AAACTAGCAC CATACCTATT GGTATGTGTA AATATTAATG AGTGTTAATC
TCCATATTTT TTTAGTGCTG TTCAGACTGT TGCCTTTTTC TTTTACACTT TTTCATTTTG TTAACATGAA CCAAAAATGC
CTATTTATTA CATTAAACAT GACAATGATG TGTTAGCTTT GTTATTATTT TCATCCTTCC TAGATATTAG TATTTATGCT
CTTCATTTCA CATTAATTTT ACTTGAAAAT TAA

>Vigan.08G099700.01
ATGACGATGA GGGTTTCGGT TGTTTTAAGT GTTCTGTTCT TGATCCAGTT TTGGCCTGGG GAAGCTGAGA AATTTTCGGT
GGATGGAAAG GTTTTGATTT TGGACGACTC CAACTTCGAT TCCGCCATAG CTTCCTTTGA TCACATCTTG GTTGACTTTT
ACGCTCCCTG GTGTGGTCAC TGCAAGCGTC TTGCTCCCGA GTTAGATGCA GCTGCGCCTG TACTTGCAAC CTTGAACAAA
CCCATTGTCA TTGCAAAAGT AGATGCAGAC AAACATACCA GCCTTGCAAA AAAATATGAT GTTGATGCAT ATCCAACCAT
TTTGCTGTTT AATCATGGCA TCCCCACCGA ATACCGTGGA CCAAGGAAGG CAGATTTACT CGTTAGATAT CTGAAGAAGT
TTGCTGCTTC TGATGTTTCC ATTCTTGATT CAGATTCTGC CGTGAATACA TTCGTTGCAG AAGCTGGACC TTTTTTCCCC
ATTTTTATAG GTTTCGGTTT GAAAAACACG ATAATAGAAA AGTTTGGCAT AAAGTACAAG AAAAATGCAT GGTTTTCTGT
GGCAAAGGAC TTTTCAGAGG ATCTCATGGT ATTGTATGAC TTTGATAAGA TTCCTGCATT GGTTTCCCTG AATCCACAGT
ACAATGAGCG GAACACATTC TACGGACCCT TTGAAGATGA ATTTTTGGAA GATTTTGTTA AACAAAACCT GATGCCTCTG
GTCGTGCCGA TATCCTACGA AACACTTAAG TTGGTGAAAG CAGATGGTAG GAAAGTAGTT TTGACCATTG TTGAAGATGA
AGATGAAGAA AGATCAAGAG AATTGACTAA GTTATTGAAG GCTGCTGCAT CTGCTAATCG TGACTTAGTA TTTGGTTATG
TTGGAGTCAA ACAAATGGAA GAATTTGCTG AGCAGTTTGA TATTAGTACT AAACTACCAA AAATGGTGGT TTGGGATAAA
AGTGATGATT ACCTTTCAGT TGTTGATTCA GAAAGTATTG AGGGGGAGGA TCAGGCATCT CAAATCACTA AATTTCTGGA
AGGATACAGG GAAGGAAGAA CCATAAACAA AACATTCAGT GGACCTTCGC TGATGCAATT CATTCATCGG TCTTTTGACA
TTAGAATGGT ATACATAATT GTTTTTGTTG TGGCATTACT GATACTTATT CAGAGCTTCA GTAAAGGAGG TGATGAGTAC
CATGCTGTAC CAAATCAAGT TCAAGTTGAT CGTGCAAGCA GTTCTGTTTC AGAAGCTGAA ATCAAAGAGT ATAAACCAGG
TGACAAGGAA GACTAA

>Vigan.08G099700.01
MTMRVSVVLS VLFLIQFWPG EAEKFSVDGK VLILDDSNFD SAIASFDHIL VDFYAPWCGH CKRLAPELDA AAPVLATLNK
PIVIAKVDAD KHTSLAKKYD VDAYPTILLF NHGIPTEYRG PRKADLLVRY LKKFAASDVS ILDSDSAVNT FVAEAGPFFP
IFIGFGLKNT IIEKFGIKYK KNAWFSVAKD FSEDLMVLYD FDKIPALVSL NPQYNERNTF YGPFEDEFLE DFVKQNLMPL
VVPISYETLK LVKADGRKVV LTIVEDEDEE RSRELTKLLK AAASANRDLV FGYVGVKQME EFAEQFDIST KLPKMVVWDK
SDDYLSVVDS ESIEGEDQAS QITKFLEGYR EGRTINKTFS GPSLMQFIHR SFDIRMVYII VFVVALLILI QSFSKGGDEY
HAVPNQVQVD RASSSVSEAE IKEYKPGDKE D*