VIGGS:GBrowse

Vigan.08G100400.01

Basic Information:

Name:	Vigan.08G100400.01 Multiple alignment Variant Information
Position:	Chr08:8470465..8474341 (+ strand)
Length:	3877

Functional Information:

Description:	Similar to Seed calcium dependent protein kinase b. [Q84P28, Glycine max]
GO:	Biological Process: protein phosphorylation (GO:0006468)
	Molecular Function: protein kinase activity (GO:0004672)
	Molecular Function: protein serine/threonine kinase activity (GO:0004674)
	Molecular Function: calcium ion binding (GO:0005509)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro:	Protein kinase domain (IPR000719)
	EF-hand domain (IPR002048)
	Serine/threonine- / dual specificity protein kinase, catalytic domain (IPR002290)
	Serine/threonine-protein kinase, active site (IPR008271)
	Protein kinase-like domain (IPR011009)
	EF-hand domain pair (IPR011992)
	Protein kinase, ATP binding site (IPR017441)
	EF-Hand 1, calcium-binding site (IPR018247)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.03,0.07,1.79,1.29,0.95,0.83,0.92,1.70
Arabidopsis thaliana homolog:	AT1G18890.1, AT1G35670.1, AT1G50700.1, AT1G61950.1, AT1G74740.1, AT1G76040.2, AT2G17290.1, AT2G38910.1, AT3G10660.1, AT3G20410.1, AT3G51850.1, AT4G04720.1, AT4G09570.1, AT4G21940.2, AT4G23650.1, AT4G35310.1, AT4G38230.2, AT5G04870.1, AT5G12180.1, AT5G12480.1, AT5G19360.1, AT5G23580.1

Automatic updates:

Name:	NM_001248700 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max calmodulin-like domain protein kinase isoenzyme beta (LOC547887), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001348955 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max calmodulin-like domain protein kinase isoenzyme beta (CDPK-BETA), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:8470465..8470540 (+ strand)
Length:	76
Type:	five_prime_UTR

Position:	Chr08:8470541..8471075 (+ strand)
Length:	535
Type:	CDS

Position:	Chr08:8471971..8472114 (+ strand)
Length:	144
Type:	CDS

Position:	Chr08:8472230..8472382 (+ strand)
Length:	153
Type:	CDS

Position:	Chr08:8472501..8472613 (+ strand)
Length:	113
Type:	CDS

Position:	Chr08:8473141..8473308 (+ strand)
Length:	168
Type:	CDS

Position:	Chr08:8473440..8473664 (+ strand)
Length:	225
Type:	CDS

Position:	Chr08:8474061..8474198 (+ strand)
Length:	138
Type:	CDS

Position:	Chr08:8474199..8474341 (+ strand)
Length:	143
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G100400.01
ATCACATTCA TTTTCAAACC TCCCCCACAG AAACATTTAG GAGTTCAGAG GGAGAGAAAA AGAGAGAACA AACAAAATGC
AGAAGCATGG TTTTTCAGCG AAACGTAGCG TGTTACCGTA TCAAACACCG AGACTAAGGG ACCACTACGT TCTGGGGAAG
AAGCTGGGAC AAGGGCAATT TGGAACCACT TACCTTTGCA CGCACAAGAT GACGGGGAAG CTCTACGCAT GCAAATCGAT
CCCGAAGAGG AAGCTTCTGT GTCAGGAGGA TTACGATGAT GTGTGGAGGG AGATTCAGAT CATGCACCAT TTGTCAGAGC
ATCCCAACGT TGTTCAGATA CAAGGGACGT ACGAGGATTC TGTGTTCGTG CACCTTGTGA TGGAGCTGTG TGCCGGGGGT
GAGCTTTTTG ACAGGATCAT TCAGAAGGGG CATTACAGCG AGAGAGAGGC TGCCAAGTTG ATAAAGACCA TTGTTGGGGT
GGTGGAGGCG TGCCACTCTC TTGGGGTTAT GCATAGGGAT CTCAAGCCTG AGAATTTCTT GTTTGATACC CCTGGTGAAG
ATGCCCAGAT GAAGGCCACG GATTTTGGCC TCTCTGTCTT CTACAAGCCA GGACAAGCCT TCCATGATGT AGTGGGAAGT
CCGTACTATG TTGCCCCTGA GGTGTTGTGC AAGCACTATG GACCAGAAGT GGACGTATGG AGCGCTGGTG TTATCCTATA
CATCTTACTG AGTGGGGTGC CACCTTTCTG GGCTGAGAGT GAAGCAGGAA TTTTCAGACA GATTATAAAC GGAGAGCTTG
ATTTTGTTTC TGAGCCGTGG CCAAATATCT CAGAAAGTGC TAAAGAATTG GTAAAACAGA TGTTAGACAG GGACCCTAAG
AAAAGAGTTT CTGCTCATGA AGTTTTATGT AACCCTTGGA TTGTTGATGA TATTGCACCT GACAGACCTC TGGACTCTGC
TGTTTTGACA CGCCTAAAGC ATTTCTCAGC AATGAATAAA CTTAAGAAGA TGGCATTAAG GGTCATTGCT GAAAGACTTT
CAGAGGAAGA AATAGGTGGA TTGAAAGAGT TATTTAAAAT GATTGACACA GACAACAGTG GGACAATAAC TTTTGAGGAA
CTGAAGGAGG GTTTGAGAAG TGTGGGCTCT AATCTCATGG AATCTGAAAT CAAATCCCTT ATGGAGGCGG CTGATATAGA
CAACAGTGGA AGTATAGACT ATGGTGAATT TCTTGCTGCT ACACTGCACT TGAATAAGAT GGAAAGAGAG GAGAATTTGG
TTGCTGCTTT TTCCTATTTT GATAAAGATG GTAGTGGTTA CATCACCATT GATGAGCTTC AGCAGGCTAC CAAGGATTTT
GGCCTTGGCG ATGTGCATCT AGATGAGATG ATCAAAGAGA TTGATCAAGA TAATGATGGC AGAATTGATT ATTCAGAGTT
TGCAGCAATG ATGAAAACGG GTGATCCGAA TGTTGGTAGA AGCAGAACCA TGAAAGGCAA TTTGAACTTC AATATTGCAG
ATGCTTTTGG AATGAAAGAC TCTTCCTCTT GATATGCTAC CTGATTTTTT TTGTACAGTT AGGACCAATG ATGGTAGAAC
AAAAATGATA GTAAAATTTT CCAACAGCGT GGCTATAATA TGTTTTGTAT TGGAACTTTG TTTACCTTCT GGAACAATCT
TTTTATTTCT TTAGA

[show][hide][copy]CDS

>Vigan.08G100400.01
ATGCAGAAGC ATGGTTTTTC AGCGAAACGT AGCGTGTTAC CGTATCAAAC ACCGAGACTA AGGGACCACT ACGTTCTGGG
GAAGAAGCTG GGACAAGGGC AATTTGGAAC CACTTACCTT TGCACGCACA AGATGACGGG GAAGCTCTAC GCATGCAAAT
CGATCCCGAA GAGGAAGCTT CTGTGTCAGG AGGATTACGA TGATGTGTGG AGGGAGATTC AGATCATGCA CCATTTGTCA
GAGCATCCCA ACGTTGTTCA GATACAAGGG ACGTACGAGG ATTCTGTGTT CGTGCACCTT GTGATGGAGC TGTGTGCCGG
GGGTGAGCTT TTTGACAGGA TCATTCAGAA GGGGCATTAC AGCGAGAGAG AGGCTGCCAA GTTGATAAAG ACCATTGTTG
GGGTGGTGGA GGCGTGCCAC TCTCTTGGGG TTATGCATAG GGATCTCAAG CCTGAGAATT TCTTGTTTGA TACCCCTGGT
GAAGATGCCC AGATGAAGGC CACGGATTTT GGCCTCTCTG TCTTCTACAA GCCAGGACAA GCCTTCCATG ATGTAGTGGG
AAGTCCGTAC TATGTTGCCC CTGAGGTGTT GTGCAAGCAC TATGGACCAG AAGTGGACGT ATGGAGCGCT GGTGTTATCC
TATACATCTT ACTGAGTGGG GTGCCACCTT TCTGGGCTGA GAGTGAAGCA GGAATTTTCA GACAGATTAT AAACGGAGAG
CTTGATTTTG TTTCTGAGCC GTGGCCAAAT ATCTCAGAAA GTGCTAAAGA ATTGGTAAAA CAGATGTTAG ACAGGGACCC
TAAGAAAAGA GTTTCTGCTC ATGAAGTTTT ATGTAACCCT TGGATTGTTG ATGATATTGC ACCTGACAGA CCTCTGGACT
CTGCTGTTTT GACACGCCTA AAGCATTTCT CAGCAATGAA TAAACTTAAG AAGATGGCAT TAAGGGTCAT TGCTGAAAGA
CTTTCAGAGG AAGAAATAGG TGGATTGAAA GAGTTATTTA AAATGATTGA CACAGACAAC AGTGGGACAA TAACTTTTGA
GGAACTGAAG GAGGGTTTGA GAAGTGTGGG CTCTAATCTC ATGGAATCTG AAATCAAATC CCTTATGGAG GCGGCTGATA
TAGACAACAG TGGAAGTATA GACTATGGTG AATTTCTTGC TGCTACACTG CACTTGAATA AGATGGAAAG AGAGGAGAAT
TTGGTTGCTG CTTTTTCCTA TTTTGATAAA GATGGTAGTG GTTACATCAC CATTGATGAG CTTCAGCAGG CTACCAAGGA
TTTTGGCCTT GGCGATGTGC ATCTAGATGA GATGATCAAA GAGATTGATC AAGATAATGA TGGCAGAATT GATTATTCAG
AGTTTGCAGC AATGATGAAA ACGGGTGATC CGAATGTTGG TAGAAGCAGA ACCATGAAAG GCAATTTGAA CTTCAATATT
GCAGATGCTT TTGGAATGAA AGACTCTTCC TCTTGA

[show][hide][copy]PROTEIN

>Vigan.08G100400.01
MQKHGFSAKR SVLPYQTPRL RDHYVLGKKL GQGQFGTTYL CTHKMTGKLY ACKSIPKRKL LCQEDYDDVW REIQIMHHLS
EHPNVVQIQG TYEDSVFVHL VMELCAGGEL FDRIIQKGHY SEREAAKLIK TIVGVVEACH SLGVMHRDLK PENFLFDTPG
EDAQMKATDF GLSVFYKPGQ AFHDVVGSPY YVAPEVLCKH YGPEVDVWSA GVILYILLSG VPPFWAESEA GIFRQIINGE
LDFVSEPWPN ISESAKELVK QMLDRDPKKR VSAHEVLCNP WIVDDIAPDR PLDSAVLTRL KHFSAMNKLK KMALRVIAER
LSEEEIGGLK ELFKMIDTDN SGTITFEELK EGLRSVGSNL MESEIKSLME AADIDNSGSI DYGEFLAATL HLNKMEREEN
LVAAFSYFDK DGSGYITIDE LQQATKDFGL GDVHLDEMIK EIDQDNDGRI DYSEFAAMMK TGDPNVGRSR TMKGNLNFNI
ADAFGMKDSS S*