VIGGS:GBrowse

Vigan.08G100600.01

Basic Information:

Name:	Vigan.08G100600.01 Multiple alignment Variant Information
Position:	Chr08:8484771..8487497 (+ strand)
Length:	2727

Functional Information:

Description:	Similar to 50S ribosomal protein L21, chloroplastic-like. [XP_004496371.1, Cicer arietinum]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: RNA binding (GO:0003723)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein L21 (IPR001787)
InterPro:	Ribosomal protein L21, conserved site (IPR018258)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:86.00,20.81,53.36,188.27,22.64,62.34,11.05,31.99
Arabidopsis thaliana homolog:	AT1G35680.1

Automatic updates:

Name:	NM_001251219 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527321 (LOC100527321), mRNA; nuclear gene for chloroplast product.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001252777 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative 50S ribosomal protein L21, chloroplastic (LOC100795152), mRNA; nuclear gene for chloroplast product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:8484771..8484915 (+ strand)
Length:	145
Type:	five_prime_UTR

Position:	Chr08:8484916..8485203 (+ strand)
Length:	288
Type:	CDS

Position:	Chr08:8485561..8485641 (+ strand)
Length:	81
Type:	CDS

Position:	Chr08:8486478..8486579 (+ strand)
Length:	102
Type:	CDS

Position:	Chr08:8486663..8486737 (+ strand)
Length:	75
Type:	CDS

Position:	Chr08:8487349..8487444 (+ strand)
Length:	96
Type:	CDS

Position:	Chr08:8487445..8487497 (+ strand)
Length:	53
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G100600.01
AATTTCTATT GTTAAAAAAA ATAATAAAAC TAATTTAAAA ATAATTTTTG GGTGAAAAAT AAAAGTGAGA AGAGAAAAGG
ATAGGAAAGA AGAGAGGATA GATAGGCCTG AGAAGAAGAG ACTGAGAGAG AGAGGTCTCT CAAAAATGGC TACTGCCACT
GTTTCAACTC TGTGCGCTAC ATTCGGAACC CATTGCGCCA TTTCTCATAA CCCTAAACCT CTATTTTCTC CACCTTTCAA
TCTCAATCGT TTTCCTTCTC ACTCTTACAA TTTCACATTC TCGCCTCGCT CACCTCTCGC ACCCGTTCCC AAGTCCTCAG
AATCTGCGGT TGCCCAAACC GAAACGGAAA CCGGTTCGAC CGAACCAGAA CCGACCCAGA TTGTCTCGGC TAAGGCACCC
TCATGGGAGC CCGGTCTCTT CGCAGTCGTA ATGATTGGTT CACGCCAATA TATTGTTCAC CCCGGGCGAA AGCTTGTTGT
TCAGAGGTTG TCAGGTGCAA ATGTTAATGA TAAGATTGCC TTGCACAAAG TTTTACTGGT TGGCACTGAT ACATCTTGCT
ACATTGGGAA ACCAATAGTT ACAAATGCTG TGGTATATGC AACGGTTGAA GAGCAGGGTT TAGACCCCAA AGTAATTGTC
TTCAAATATA AAAAGAAGAA GCACTATCGC AGAAACATTG GACACAGACA GCCACATACA CGTATACGGA TAAATAGCAT
TATGGGCTAT GAGAACTACC CAAAAGTTAC TATGGACGAT ATCAAATCGA AGGATTCCGA ATCATGAACA TCTTGTGAAC
TGTCCCTATA CTGTAGCTTC TTCATCTCCA ATTTTATGCA

[show][hide][copy]CDS

>Vigan.08G100600.01
ATGGCTACTG CCACTGTTTC AACTCTGTGC GCTACATTCG GAACCCATTG CGCCATTTCT CATAACCCTA AACCTCTATT
TTCTCCACCT TTCAATCTCA ATCGTTTTCC TTCTCACTCT TACAATTTCA CATTCTCGCC TCGCTCACCT CTCGCACCCG
TTCCCAAGTC CTCAGAATCT GCGGTTGCCC AAACCGAAAC GGAAACCGGT TCGACCGAAC CAGAACCGAC CCAGATTGTC
TCGGCTAAGG CACCCTCATG GGAGCCCGGT CTCTTCGCAG TCGTAATGAT TGGTTCACGC CAATATATTG TTCACCCCGG
GCGAAAGCTT GTTGTTCAGA GGTTGTCAGG TGCAAATGTT AATGATAAGA TTGCCTTGCA CAAAGTTTTA CTGGTTGGCA
CTGATACATC TTGCTACATT GGGAAACCAA TAGTTACAAA TGCTGTGGTA TATGCAACGG TTGAAGAGCA GGGTTTAGAC
CCCAAAGTAA TTGTCTTCAA ATATAAAAAG AAGAAGCACT ATCGCAGAAA CATTGGACAC AGACAGCCAC ATACACGTAT
ACGGATAAAT AGCATTATGG GCTATGAGAA CTACCCAAAA GTTACTATGG ACGATATCAA ATCGAAGGAT TCCGAATCAT
GA

[show][hide][copy]PROTEIN

>Vigan.08G100600.01
MATATVSTLC ATFGTHCAIS HNPKPLFSPP FNLNRFPSHS YNFTFSPRSP LAPVPKSSES AVAQTETETG STEPEPTQIV
SAKAPSWEPG LFAVVMIGSR QYIVHPGRKL VVQRLSGANV NDKIALHKVL LVGTDTSCYI GKPIVTNAVV YATVEEQGLD
PKVIVFKYKK KKHYRRNIGH RQPHTRIRIN SIMGYENYPK VTMDDIKSKD SES*