GBrowse Details

Vigan.08G100700.01

Basic Information:
Name: Vigan.08G100700.01
Multiple alignment
Variant Information
Position: Chr08:8488814..8492207 (- strand)
Length: 3394
Functional Information:
Description: Similar to Uncharacterized protein. [I1NHA4, Glycine max]
InterPro: SNARE associated Golgi protein (IPR015414)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.64,15.43,21.52,15.41,25.85,29.78,25.62,19.69
Arabidopsis thaliana homolog: AT4G09580.1
Automatic updates:
Name: NM_001254160 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100789661 (LOC100789661), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:8488814..8489412 (- strand)
Length: 599
Type: three_prime_UTR
Position: Chr08:8489413..8489544 (- strand)
Length: 132
Type: CDS
Position: Chr08:8491083..8491253 (- strand)
Length: 171
Type: CDS
Position: Chr08:8491353..8491623 (- strand)
Length: 271
Type: CDS
Position: Chr08:8491717..8491958 (- strand)
Length: 242
Type: CDS
Position: Chr08:8491959..8492207 (- strand)
Length: 249
Type: five_prime_UTR


>Vigan.08G100700.01
CTTATGTTCT TCAAAGTTGA AATTGAAAAA ACTCTTTCTC TCTCTCTCTC TCCATCCGAT TGCATTGCAG TTAAATTTCG
CAGAAGGATC CTCACCCGTT CTCTCTCTCT CTGTCTCTCT CTTCCTGGCC CCAAATCTAA GGGCTTTCAC CCAAACAGAG
AAGACCATTG CATCGACCCT TCAAAATCCC CAATTCCCAG AACTCCGGTC AACTCGATTC CCATGAGATT TGGTTAATTG
GATCGTAGTA TGGCGGCGCC GAGGAATGTG ACGGCGACGA GGGATGAAGA GAAGGGCGAG GATGACGATT CACCCTCCGC
CAAGAAGCCC AAATTGGAGA GGTTCCCGCT CAACACGTGG GAATTTGCCG CCGCCGTTGC CGTCTTCTTC GTGTTCTCCA
CGGGCCTCTT CTGCATTTAC CTCACCATGC CCCCCGCCGC TTACACAAGC CTCAAAATCC CCCGCACGCT CTCTGATCTT
CGTCTCCTCA AGGAAGATCT TTCGATGTAT GCGAGCAACA ATCCGGCGCA GTTTATTCTT GGCTATTGCT CCACCTACAT
CTTCATGCAG ACTTTCATGA TTCCTGGGAC AATCTTCATG TCCCTTTTAG CTGGGGCGCT TTTTGGAGTT GTACGAGGAA
TACTATTGGT TGTTTTCAAT GCCACTGCCG GTGCATCTTC CTGTTTCTTT TTGTCTAAGT TAATTGGCAG GCCTTTGGTT
ACTTGGTTGT GGCCTGAGAA GCTAAGGTTC TTCCAAGCTG AGATTGCAAA GCGTAGGGAT AAGCTGCTGA ATTACATGCT
TTTTCTGAGG ATAACCCCGA CATTGCCAAA TCTGTTCATC AATTTGGCCT CTCCCATTGT TGATGTTCCG TTTCATGTAT
TCTTTTTGGC TACTTTGGTT GGTCTTGTTC CGGCAGCATA TATTACTGTC AGAGCTGGCC TTGCTCTTGG GGATCTAAAG
TCAATTAAGG ATCTATATGA TTTTAAGACA TTATCGGTAC TTTTCCTCAT TGGTTTTGTT TCCATAGTTC CAACACTTCT
GAAGAGAAAG AGAGTATACG AATGAAGTTG TGCGAGCCTA GCTTGCGTTA TACATTTTGT CAAAAGATAA GTTACGTTAT
CAGAGAAGAT AGTATTGAAG AAAGATATCA ATGAGAAAGG GTGTATTGTT ATTAACTTAA ACAGTAGCAT GTGCTCCATT
TTATTTTCTG TGGTGGAGCC TAAGTTTTTT ATGTTTCCCT TTTTATATTT TGGTTGTGTG GAGAGAGCAA GGGTAAACAT
AGCTGAGTGA GTGGTGTACA ATCGATTGAG CTACGGTTAC CAGGCTTTGT TGGAGCATTA AATTACACAT ACTGACATTA
ACGTCATCAA GAAGGTTGTG GTGTTTGTTT AGCGATGCAG TATGCATACT TGCTCCGCAC CATATAGGAT CTGACTTTTA
TTCGTTAGTG TTGCTTTTTC AATCTGTAGA AGAGAACTTC AACCATTATT CTTCCTGTCG TTAGAGTCAC CTCTGGTATT
GTTATCCAAT TTAATGCTCT TTCTCTAACA GGAAGTCATC TCAATGTTGC GTATAAACTT AGGATGAAAC GGACTGATGT
TTGTATAAAT CAGCTAGATA CTGCAATCTG CACTTAAAAG AATTGGTGTT TAGTTCCATT CCAT

>Vigan.08G100700.01
ATGGCGGCGC CGAGGAATGT GACGGCGACG AGGGATGAAG AGAAGGGCGA GGATGACGAT TCACCCTCCG CCAAGAAGCC
CAAATTGGAG AGGTTCCCGC TCAACACGTG GGAATTTGCC GCCGCCGTTG CCGTCTTCTT CGTGTTCTCC ACGGGCCTCT
TCTGCATTTA CCTCACCATG CCCCCCGCCG CTTACACAAG CCTCAAAATC CCCCGCACGC TCTCTGATCT TCGTCTCCTC
AAGGAAGATC TTTCGATGTA TGCGAGCAAC AATCCGGCGC AGTTTATTCT TGGCTATTGC TCCACCTACA TCTTCATGCA
GACTTTCATG ATTCCTGGGA CAATCTTCAT GTCCCTTTTA GCTGGGGCGC TTTTTGGAGT TGTACGAGGA ATACTATTGG
TTGTTTTCAA TGCCACTGCC GGTGCATCTT CCTGTTTCTT TTTGTCTAAG TTAATTGGCA GGCCTTTGGT TACTTGGTTG
TGGCCTGAGA AGCTAAGGTT CTTCCAAGCT GAGATTGCAA AGCGTAGGGA TAAGCTGCTG AATTACATGC TTTTTCTGAG
GATAACCCCG ACATTGCCAA ATCTGTTCAT CAATTTGGCC TCTCCCATTG TTGATGTTCC GTTTCATGTA TTCTTTTTGG
CTACTTTGGT TGGTCTTGTT CCGGCAGCAT ATATTACTGT CAGAGCTGGC CTTGCTCTTG GGGATCTAAA GTCAATTAAG
GATCTATATG ATTTTAAGAC ATTATCGGTA CTTTTCCTCA TTGGTTTTGT TTCCATAGTT CCAACACTTC TGAAGAGAAA
GAGAGTATAC GAATGA

>Vigan.08G100700.01
MAAPRNVTAT RDEEKGEDDD SPSAKKPKLE RFPLNTWEFA AAVAVFFVFS TGLFCIYLTM PPAAYTSLKI PRTLSDLRLL
KEDLSMYASN NPAQFILGYC STYIFMQTFM IPGTIFMSLL AGALFGVVRG ILLVVFNATA GASSCFFLSK LIGRPLVTWL
WPEKLRFFQA EIAKRRDKLL NYMLFLRITP TLPNLFINLA SPIVDVPFHV FFLATLVGLV PAAYITVRAG LALGDLKSIK
DLYDFKTLSV LFLIGFVSIV PTLLKRKRVY E*