VIGGS:GBrowse

Vigan.08G104500.01

Basic Information:

Name:	Vigan.08G104500.01 Multiple alignment Variant Information
Position:	Chr08:8789245..8792380 (+ strand)
Length:	3136

Functional Information:

Description:	Similar to ATP synthase subunit d, mitochondrial-like. [XP_004496331.1, Cicer arietinum]
GO:	Biological Process: ATP synthesis coupled proton transport (GO:0015986)
	Cellular Component: mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) (GO:0000276)
	Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078)
InterPro:	ATPase, F0 complex, subunit D, mitochondrial (IPR008689)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:154.28,94.58,182.04,111.65,222.51,321.73,178.85,107.90
Arabidopsis thaliana homolog:	AT3G52300.1

Automatic updates:

Name:	NM_001248143 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306184 (LOC100306184), mRNA; nuclear gene for mitochondrial product.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001248944 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100500032 (LOC100500032), mRNA; nuclear gene for mitochondrial product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:8789245..8789306 (+ strand)
Length:	62
Type:	five_prime_UTR

Position:	Chr08:8789307..8789477 (+ strand)
Length:	171
Type:	CDS

Position:	Chr08:8789930..8790011 (+ strand)
Length:	82
Type:	CDS

Position:	Chr08:8791449..8791513 (+ strand)
Length:	65
Type:	CDS

Position:	Chr08:8791646..8791732 (+ strand)
Length:	87
Type:	CDS

Position:	Chr08:8791812..8791913 (+ strand)
Length:	102
Type:	CDS

Position:	Chr08:8791914..8792380 (+ strand)
Length:	467
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G104500.01
GCACAGCAAC GAGAAGGGGA ATTGGAATCG TGTTTGGGGA GAAGAACATC GCAGGGAAAA AAATGAGCGG AACGGTGAAG
AAAGTTACCG ATGTGGCGTT TAAGGTGGGA AAAAACATTG ATTGGGATGG AATGGCGAAG CTTCTCGTCT CCGATGAGGC
TCGCAGGGAG TTCTCGAATC TTCGTCGCGC TTTCGACGAG GTTAACTCCC AACTACAAAC CAAGTTCAGT CAGGAACCTG
AGCCCATCGA CTGGGATTAT TACAGGAAAG GCATTGGCCC TCGTTTGGTA GACATGTACA AGGAGCATTA CGAGAGCATT
GAGGTCCCCA AGTTTGTTGA CACAGTAACT CCTCAGTATA AGGCTAAATT TGACTCCCTG TTGATTGAGC TTAAAGAAGC
AGAAGAGAAA TCTCTGAAGG AGTCTGAACG TTTGGAAAAG GAAATTGCTG ATGTACAAGA GTTGAAGAAA AAGCTCAGTA
CCATGACGGC CGATGAGTAC TTCGAAAAGC ATCCCGAGCT GAGAAAGAAG TTCGATGATG AGATCAGGAA TGATAACTGG
GGCTATTGAT TTTCAATTAG CAAAACGTCA GAATTTGATG TTTTCCTTGC TGGTTCAATA AAAACAACTA CATCTATTTC
TTTGTAACTC GGTTCCCTTT TTCAGTTAAA AGGTTTTTGA TATACAGTGT CGAATTTTTT GTGGTACTGT AGTTAATCAC
ATACGATTTC ACCTTAAAGT GCAGCTTTGG TTGTCCAAAG AAACTGATAT CTTGTCGTTT CCGTTCCGAG ACAATGTCAA
GAAAACGCTA CTCTGCGATT GTCGTTATAA ATATGTCTGC CCGGTAAAGA GATTTTAATT TATGTTAAAG GTTTGATGGA
TCATCAAATC AAGCATTACA CTTCAGCTCG ATATTCCATA GGTCGACAGA TTCGGGTTAA AATGTTACAT GGGATTTGTA
CTGTTGATAA GAATGATAGT TAAATAGGTA TAGTTTGGTA ATGTGAAATG CCAATACTCC ATCTATCGGA ATGACC

[show][hide][copy]CDS

>Vigan.08G104500.01
ATGAGCGGAA CGGTGAAGAA AGTTACCGAT GTGGCGTTTA AGGTGGGAAA AAACATTGAT TGGGATGGAA TGGCGAAGCT
TCTCGTCTCC GATGAGGCTC GCAGGGAGTT CTCGAATCTT CGTCGCGCTT TCGACGAGGT TAACTCCCAA CTACAAACCA
AGTTCAGTCA GGAACCTGAG CCCATCGACT GGGATTATTA CAGGAAAGGC ATTGGCCCTC GTTTGGTAGA CATGTACAAG
GAGCATTACG AGAGCATTGA GGTCCCCAAG TTTGTTGACA CAGTAACTCC TCAGTATAAG GCTAAATTTG ACTCCCTGTT
GATTGAGCTT AAAGAAGCAG AAGAGAAATC TCTGAAGGAG TCTGAACGTT TGGAAAAGGA AATTGCTGAT GTACAAGAGT
TGAAGAAAAA GCTCAGTACC ATGACGGCCG ATGAGTACTT CGAAAAGCAT CCCGAGCTGA GAAAGAAGTT CGATGATGAG
ATCAGGAATG ATAACTGGGG CTATTGA

[show][hide][copy]PROTEIN

>Vigan.08G104500.01
MSGTVKKVTD VAFKVGKNID WDGMAKLLVS DEARREFSNL RRAFDEVNSQ LQTKFSQEPE PIDWDYYRKG IGPRLVDMYK
EHYESIEVPK FVDTVTPQYK AKFDSLLIEL KEAEEKSLKE SERLEKEIAD VQELKKKLST MTADEYFEKH PELRKKFDDE
IRNDNWGY*