GBrowse Details

Vigan.08G105300.01

Basic Information:
Name: Vigan.08G105300.01
Multiple alignment
Variant Information
Position: Chr08:8840057..8843192 (+ strand)
Length: 3136
Functional Information:
Description: Similar to Vacuolar ER assembly factor, Vma12, putative isoform 1. [XP_007019880.1, Theobroma cacao]
InterPro: ATPase, vacuolar ER assembly factor, Vma12 (IPR021013)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:109.53,54.40,22.27,31.48,59.81,18.10,20.60,22.88
Arabidopsis thaliana homolog: AT5G52980.1
Automatic updates:
Name: NM_001251293 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499678 (LOC100499678), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:8840057..8840212 (+ strand)
Length: 156
Type: five_prime_UTR
Position: Chr08:8840213..8840476 (+ strand)
Length: 264
Type: CDS
Position: Chr08:8840614..8840752 (+ strand)
Length: 139
Type: CDS
Position: Chr08:8842524..8842609 (+ strand)
Length: 86
Type: CDS
Position: Chr08:8842730..8842891 (+ strand)
Length: 162
Type: CDS
Position: Chr08:8842892..8843192 (+ strand)
Length: 301
Type: three_prime_UTR


>Vigan.08G105300.01
GAAAACTTGC AAGTTTCTTT TTTTTCTTAT TTTTCATAAA ACAAGAAAGA AAAAGTACCC TCTACGCGAG GAAAGCAGCC
ACTCTGCGTC TGCAGTGAAG ATAGTATTTA GCTGGTGAAT GGAGTGCTGG AAACAGTAGT AGCAGAGAAT CCAGCAATGG
GTACCGACAA GCCAAACCGG GTCGGGTTGA TTATATCCAC CACACCCTTG ATTCGGGGTT TCCTCTCCGA TGCGTCAAAA
GACGCGAGTC TTTCCGATGA ACTTCGACAA GCATCCTCCG ACCTGCTCCT CCAATCGGAG GTACCCTACG CCGCACTTCG
TGCTGTGTGG ATGTCCTCTG ATCCATCCAC CAGACCCGAC TTGACCCGAC TTTTTTCGGG CACCCGTTTC ATCTTCTCCA
GCCCTAAGCC CAGGGAGAAG AGTGAAGAAT TGAAAGCGAG GCTGAGAAAG CTGGAAGATT TAGCGGAGCG GAAAGCGTAT
CAAGAACTTG TGAAGGATAT TGCACCGCCT AAGGATGTTC CGGAACCATT TTCTTCTTAC AAGGATCAAT TAGGGTTTGG
TTTACATGTT GTGGTTACCA TGTTTACTGG CTATCTTCTA GGATATGCTG CATTTAGAGC CTTGTTTAAT CACAGTCCTG
CCATGAATGC TGCTGGAGGA ATTCTGGGGT TGGTTGGTGC CATGTTTGTT GAAACTTTCC TTTTCATTAT TAGAAGTTCA
AATGCAGATA CCAACAGAAC AAAAAAATTC AGTCAAAAAT CAAGATCATC CTTTTCAACA CCCAGTTCTG CTAAGAAAAA
TCAGTAGAAG TATCAGGTTG GTTATTTTAC ACTTTTAAGA AATATCATCG TTCTGAGTTC CAGATAATTT AGAAGTGTGA
TAACTCATGG CAAGCCCTTT GTCTTCTATG CAAAAACGTG AATATTGTTG CCTCTGAGGA TCTTAAGTAC GAACACTTGT
AAACAGTAGC CAAATAGTAT GAGAACTATG TTAGATGTCT TTATATCAGA TATTGAATAA ACACTTCAAT GTTTGTAATT
GTAATTTTAT ATTTTTTACA CTTTCATTTT CTACAACTTT TTATTGATAC TATTTTGAAT ACCAGAGT

>Vigan.08G105300.01
ATGGGTACCG ACAAGCCAAA CCGGGTCGGG TTGATTATAT CCACCACACC CTTGATTCGG GGTTTCCTCT CCGATGCGTC
AAAAGACGCG AGTCTTTCCG ATGAACTTCG ACAAGCATCC TCCGACCTGC TCCTCCAATC GGAGGTACCC TACGCCGCAC
TTCGTGCTGT GTGGATGTCC TCTGATCCAT CCACCAGACC CGACTTGACC CGACTTTTTT CGGGCACCCG TTTCATCTTC
TCCAGCCCTA AGCCCAGGGA GAAGAGTGAA GAATTGAAAG CGAGGCTGAG AAAGCTGGAA GATTTAGCGG AGCGGAAAGC
GTATCAAGAA CTTGTGAAGG ATATTGCACC GCCTAAGGAT GTTCCGGAAC CATTTTCTTC TTACAAGGAT CAATTAGGGT
TTGGTTTACA TGTTGTGGTT ACCATGTTTA CTGGCTATCT TCTAGGATAT GCTGCATTTA GAGCCTTGTT TAATCACAGT
CCTGCCATGA ATGCTGCTGG AGGAATTCTG GGGTTGGTTG GTGCCATGTT TGTTGAAACT TTCCTTTTCA TTATTAGAAG
TTCAAATGCA GATACCAACA GAACAAAAAA ATTCAGTCAA AAATCAAGAT CATCCTTTTC AACACCCAGT TCTGCTAAGA
AAAATCAGTA G

>Vigan.08G105300.01
MGTDKPNRVG LIISTTPLIR GFLSDASKDA SLSDELRQAS SDLLLQSEVP YAALRAVWMS SDPSTRPDLT RLFSGTRFIF
SSPKPREKSE ELKARLRKLE DLAERKAYQE LVKDIAPPKD VPEPFSSYKD QLGFGLHVVV TMFTGYLLGY AAFRALFNHS
PAMNAAGGIL GLVGAMFVET FLFIIRSSNA DTNRTKKFSQ KSRSSFSTPS SAKKNQ*