GBrowse Details

Vigan.08G105900.01

Basic Information:
Name: Vigan.08G105900.01
Multiple alignment
Variant Information
Position: Chr08:8890719..8892720 (+ strand)
Length: 2002
Functional Information:
Description: Similar to tetraspanin-6. [XP_003536360.1, Glycine max]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Tetraspanin (IPR000301)
Tetraspanin/Peripherin (IPR018499)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.04,0.20,11.19,7.43,7.31,29.82,17.13,14.81
Arabidopsis thaliana homolog: AT3G12090.1
Automatic updates:
Name: NM_001253300 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100812912 (LOC100812912), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:8890719..8890893 (+ strand)
Length: 175
Type: five_prime_UTR
Position: Chr08:8890894..8891385 (+ strand)
Length: 492
Type: CDS
Position: Chr08:8891539..8891858 (+ strand)
Length: 320
Type: CDS
Position: Chr08:8892335..8892374 (+ strand)
Length: 40
Type: CDS
Position: Chr08:8892375..8892720 (+ strand)
Length: 346
Type: three_prime_UTR


>Vigan.08G105900.01
TTTCATTTGC TCATTTTCAC ATCCCCCAAC AAAAGTTAGA GTTTGAAGCA CAACATAAAC AAAGCAAATT GAGTGTCACC
TTTTTAAATG GGAAACAAAG CTGAAGACAG AACAAGAAGC AGCTAACAAA TGACAAAGTA GAGATAGAGT TAGAGTTAGA
GTGAGAGTGA GAGACATGTA TAGGTTCAGC AACACAGTGA TCGGGTTCTT GAACTTGTTT ACACTTTTAG CATCCATACC
AATAATTGGA GCAGGTCTAT GGATGGCAAG GAGCAGCATA ACCTGTGAAA ATTTTCTCCA AACCCCTCTT TTGGTTATAG
GATTTGTTGT GCTGGTGGTA TCACTGGCAG GCTTCATTGG TGCATGCTTT CATGTGGCAT GTGCACTATG GTTGTACTTG
GTGGTCATGT TGTTGCTCAT AGCAGCACTG ATGGGTTTGA CCATATTTGG TTTTGGTGTG ACTAGCAAGG GTGGTGGTGT
TGAAGTGCCT GGAAGGGTGT ATAAGGAGTA TCATCTTCAG GATTACTCAC CATGGCTGAG GAAGAGAATA CAGGATCCTC
GCTATTGGAG CACAATCAGA AGCTGTATTT TGGGGTCTAA AACTTGTGAA AAGCTTGCCT CTTGGACCCC TCTTGATTAC
ATGCAGAGAG ATATGTCTCC AATACAGTCT GGATGTTGTA AGCCACCAAC TGCTTGCACT TACAACATGG CAGCAATGAT
GATGACACAA GACCCTGATT GCTACAGGTG GAACAATGCC CCCAATTTGC TCTGCTATGA GTGTGATTCT TGCAAAGCTG
GTGTGCTTGA AGACATAAGA GGGAATTGGC ACAAGCTCTC GGTTCTCACT GTCACCATGC TTGTGCTTCT CATAGGAATT
TATTCCATTG GCTGTTGTGC TTTCAGAAAC ACAAAAAGAG CTGAAACGGA TTATCCCTAT GGTGAAAACA GGATGACCAA
AGTTCGACCC AGATGGGATT ACCATTGTTG GAGGTGGTTA CATGACAGAA GAGAACAACT TTATTAGAAG AGAAACTCTG
CTATGAGCCA TGTTTGGGTG CTCCATTCCA TAGTGGAAGA ATTCAGTAGT TTCTCAGTGT ATGGTGTAGA AGGCCTAAAG
GCCTTTGTTT CTACCACCTT TCCCAAATGG TTGCTTTTGT ATGTATAAAG CATAATTATG CTTTTTGTGC AATTACTTTA
TTTTGCCTTT TCTCATTAGT GAATGATGGT TTTTAATTTT AATACATGAA CTATGTGCAA CGGGGTTGGA TAGAATAGAA
TAAGCACCCT AATCCCACTT GCTTTTCTGT TCTTACACAA ATGTCCAAAA AGTTAAAATA ATGGAAGATG GAATAATCGA
ATAAGTTCTA AGG

>Vigan.08G105900.01
ATGTATAGGT TCAGCAACAC AGTGATCGGG TTCTTGAACT TGTTTACACT TTTAGCATCC ATACCAATAA TTGGAGCAGG
TCTATGGATG GCAAGGAGCA GCATAACCTG TGAAAATTTT CTCCAAACCC CTCTTTTGGT TATAGGATTT GTTGTGCTGG
TGGTATCACT GGCAGGCTTC ATTGGTGCAT GCTTTCATGT GGCATGTGCA CTATGGTTGT ACTTGGTGGT CATGTTGTTG
CTCATAGCAG CACTGATGGG TTTGACCATA TTTGGTTTTG GTGTGACTAG CAAGGGTGGT GGTGTTGAAG TGCCTGGAAG
GGTGTATAAG GAGTATCATC TTCAGGATTA CTCACCATGG CTGAGGAAGA GAATACAGGA TCCTCGCTAT TGGAGCACAA
TCAGAAGCTG TATTTTGGGG TCTAAAACTT GTGAAAAGCT TGCCTCTTGG ACCCCTCTTG ATTACATGCA GAGAGATATG
TCTCCAATAC AGTCTGGATG TTGTAAGCCA CCAACTGCTT GCACTTACAA CATGGCAGCA ATGATGATGA CACAAGACCC
TGATTGCTAC AGGTGGAACA ATGCCCCCAA TTTGCTCTGC TATGAGTGTG ATTCTTGCAA AGCTGGTGTG CTTGAAGACA
TAAGAGGGAA TTGGCACAAG CTCTCGGTTC TCACTGTCAC CATGCTTGTG CTTCTCATAG GAATTTATTC CATTGGCTGT
TGTGCTTTCA GAAACACAAA AAGAGCTGAA ACGGATTATC CCTATGGTGA AAACAGGATG ACCAAAGTTC GACCCAGATG
GGATTACCAT TGTTGGAGGT GGTTACATGA CAGAAGAGAA CAACTTTATT AG

>Vigan.08G105900.01
MYRFSNTVIG FLNLFTLLAS IPIIGAGLWM ARSSITCENF LQTPLLVIGF VVLVVSLAGF IGACFHVACA LWLYLVVMLL
LIAALMGLTI FGFGVTSKGG GVEVPGRVYK EYHLQDYSPW LRKRIQDPRY WSTIRSCILG SKTCEKLASW TPLDYMQRDM
SPIQSGCCKP PTACTYNMAA MMMTQDPDCY RWNNAPNLLC YECDSCKAGV LEDIRGNWHK LSVLTVTMLV LLIGIYSIGC
CAFRNTKRAE TDYPYGENRM TKVRPRWDYH CWRWLHDRRE QLY*