GBrowse Details

Vigan.08G107000.01

Basic Information:
Name: Vigan.08G107000.01
Multiple alignment
Variant Information
Position: Chr08:8999003..9006672 (+ strand)
Length: 7670
Functional Information:
Description: Similar to Chorismate synthase. [V7BCX4, Phaseolus vulgaris]
GO: Biological Process: aromatic amino acid family biosynthetic process (GO:0009073)
Molecular Function: chorismate synthase activity (GO:0004107)
InterPro: Chorismate synthase (IPR000453)
Chorismate synthase, conserved site (IPR020541)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:53.10,25.03,49.90,45.56,47.90,50.36,50.29,69.78
Arabidopsis thaliana homolog: AT1G48850.1
Automatic updates:
Name: NM_001250189 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chorismate synthase (LOC732570), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:8999003..8999275 (+ strand)
Length: 273
Type: five_prime_UTR
Position: Chr08:8999276..8999411 (+ strand)
Length: 136
Type: CDS
Position: Chr08:9000110..9000260 (+ strand)
Length: 151
Type: CDS
Position: Chr08:9000437..9000513 (+ strand)
Length: 77
Type: CDS
Position: Chr08:9000599..9000657 (+ strand)
Length: 59
Type: CDS
Position: Chr08:9000754..9000837 (+ strand)
Length: 84
Type: CDS
Position: Chr08:9000931..9001023 (+ strand)
Length: 93
Type: CDS
Position: Chr08:9002222..9002302 (+ strand)
Length: 81
Type: CDS
Position: Chr08:9003096..9003227 (+ strand)
Length: 132
Type: CDS
Position: Chr08:9004926..9005028 (+ strand)
Length: 103
Type: CDS
Position: Chr08:9005132..9005226 (+ strand)
Length: 95
Type: CDS
Position: Chr08:9005334..9005399 (+ strand)
Length: 66
Type: CDS
Position: Chr08:9005634..9005718 (+ strand)
Length: 85
Type: CDS
Position: Chr08:9006045..9006190 (+ strand)
Length: 146
Type: CDS
Position: Chr08:9006191..9006672 (+ strand)
Length: 482
Type: three_prime_UTR


>Vigan.08G107000.01
ATGCTGTACC AAACACTAGA GATGGACATA GGCGGGTCCG TACCCGCACA CCAAACACGA TATCGAAGAG CGAAGGGTGG
TGGGTAGGTG GTGGCCACTT GCATTTCTCA CCTTTCATAA TTACACCCAC TGCCACCAAA CCAAACCATA CACCAACCTC
CTTTTTTCCT CAACTCAACA ACCAAACTTG ATAGGATCAC ATCATATCAC TGTGATTGCT TTTGTTCCTC ATTCAATCTA
ATTTTCTGTG GCGTGTTACG AATTCCAGTT TCAATGGCGT CTTCTCTCTC CACCAAACCA TTCTCAACCG ACGCTCTCTC
CGCCTTCGCT TCTCTCAATT CCGATCTCCG ATCTCTCTCT CCCGGTTACC TCCGACTCTC GCTCCGTCCT CGTCTTCCCA
AGAGACTCCA GATACAGGCG GCTGGGAGTA CATATGGGAA TCACTTTCGT GTGACTACAT ACGGAGAGTC TCATGGAGGA
GGTGTTGGCT GTGTCATCGA TGGATGTCCT CCTCGTATAC CTCTCTCTGA AGCAGATATG CAAGTGGATC TTGACAGAAG
GAGGCCAGGT CAGAGCCGAA TTACTACTCC TAGAAAGGAG ACTGATACAT GTAAAATATT TTCAGGAGTC TCCGAAGGAC
TTACCACTGG AACTCCAATT CATGTATTTG TACCCAATAC TGATCAAAGA GGAAATGACT ATAGTGAGAT GTCATTAGCT
TATAGGCCTT CCCATGCAGA TGCCACCTAT GACATGAAGT ATGGTGTCAG ATCAGTTCAG GGTGGTGGTA GATCTTCTGC
AAGAGAAACA ATTGGAAGGG TTGCTTCGGG TGCTGTTGCT AAGAAAATCC TTAAAGATTT TTCTGGAACT GAGATTCTTG
CATATGTCTC TCAAGTTCAT AAAGTTGTTC TTCCAGAGGA CGTTATTGAT CATGACACTT TGATGCTTCA TCAGATTGAG
AGTAACATTG TTCGATGTCC AGACCCTGAA TATGCAGAGA AGATGATAGC TGCAATTGAT GCTGTGCGAG TGAGAGGTGA
TTCTGTTGGT GGTGTTGTAA CATGCATTGT TAGGAACTGT CCTCGTGGTC TTGGTTCACC AGTGTTTGAC AAACTTGAGG
CGGAGTTGGC TAAAGCTGTT ATGTCTTTGC CTGCAACCAA GGGTTTTCAG TTTGGTTCTG GGTTTGCAGG CACCTTTTTG
ACTGGGAGTG AACACAATGA TGAGTTCTAT ATAGATGAAC ATGGAAGGAC AAGAACAAGA ACAAATCGCT CTGGTGGGAT
ACAGGGTGGA ATTTCCAATG GGGAAATCAT TAATATGAGA ATAGCTTTCA AGCCAACATC GACTATTGGA AAGAAGCAAC
ATACTGTGAC TCGGGATAAA AAGGAAACAG AGCTGATAGC CCGTGGTCGC CACGATCCTT GTGTTGTCCC AAGAGCTGTA
CCCATGGTAG AGGCAGTGGT AGCTTTGGTT CTTGTGGACC AGTTGATGGC ACAATATGCT CAGTGTAATC TGTTTCCCGT
AAACTCAGAT TTGCAAGAAC CCATGGTGCC CGTTTTAGAG CCAGAAGAAG TACCATTCTG AAGAATATGA AGCGGGTACA
TAAATCAGTA TTTGTCTGCC TTCTGGCTAT AGTGTTTAGT TGACGGTTAA TTCATTTTGA TGAAAGTTCT AGTTTCCTCT
TTTGAGGATC CGTCTCCTAA TCTGCATGTT CACCTTCTGG CAGCTATTTT GGCGAATGGA ATCTATCTTC TTGTATTAGT
GTAAGTTAAT CTGTGTCTTT TTATTTTCTC CTTTTTCATT TCGAGGGTAA TATCGTTTCT AGAAAACCTG GTCGCAAAAG
CACCGAGATG TATCCTTGAA GTGAATTGGA ATTATATACT GAGAAATGTA ACAGTTTTTG GTCTAGCAAG TGTTGCTATG
CATTTCAATA AATGAAAGCT TTGGGAAGTT TAGCTGGCTG TTCATAATAT ATTATGCATT GTGATTGCGA ATTACAATGT
CAATTCTGTA CTTTTATGCG TTACTTTTTG CTTGTTAATA TGTTACTTCA CAATTTTATG GCG

>Vigan.08G107000.01
ATGGCGTCTT CTCTCTCCAC CAAACCATTC TCAACCGACG CTCTCTCCGC CTTCGCTTCT CTCAATTCCG ATCTCCGATC
TCTCTCTCCC GGTTACCTCC GACTCTCGCT CCGTCCTCGT CTTCCCAAGA GACTCCAGAT ACAGGCGGCT GGGAGTACAT
ATGGGAATCA CTTTCGTGTG ACTACATACG GAGAGTCTCA TGGAGGAGGT GTTGGCTGTG TCATCGATGG ATGTCCTCCT
CGTATACCTC TCTCTGAAGC AGATATGCAA GTGGATCTTG ACAGAAGGAG GCCAGGTCAG AGCCGAATTA CTACTCCTAG
AAAGGAGACT GATACATGTA AAATATTTTC AGGAGTCTCC GAAGGACTTA CCACTGGAAC TCCAATTCAT GTATTTGTAC
CCAATACTGA TCAAAGAGGA AATGACTATA GTGAGATGTC ATTAGCTTAT AGGCCTTCCC ATGCAGATGC CACCTATGAC
ATGAAGTATG GTGTCAGATC AGTTCAGGGT GGTGGTAGAT CTTCTGCAAG AGAAACAATT GGAAGGGTTG CTTCGGGTGC
TGTTGCTAAG AAAATCCTTA AAGATTTTTC TGGAACTGAG ATTCTTGCAT ATGTCTCTCA AGTTCATAAA GTTGTTCTTC
CAGAGGACGT TATTGATCAT GACACTTTGA TGCTTCATCA GATTGAGAGT AACATTGTTC GATGTCCAGA CCCTGAATAT
GCAGAGAAGA TGATAGCTGC AATTGATGCT GTGCGAGTGA GAGGTGATTC TGTTGGTGGT GTTGTAACAT GCATTGTTAG
GAACTGTCCT CGTGGTCTTG GTTCACCAGT GTTTGACAAA CTTGAGGCGG AGTTGGCTAA AGCTGTTATG TCTTTGCCTG
CAACCAAGGG TTTTCAGTTT GGTTCTGGGT TTGCAGGCAC CTTTTTGACT GGGAGTGAAC ACAATGATGA GTTCTATATA
GATGAACATG GAAGGACAAG AACAAGAACA AATCGCTCTG GTGGGATACA GGGTGGAATT TCCAATGGGG AAATCATTAA
TATGAGAATA GCTTTCAAGC CAACATCGAC TATTGGAAAG AAGCAACATA CTGTGACTCG GGATAAAAAG GAAACAGAGC
TGATAGCCCG TGGTCGCCAC GATCCTTGTG TTGTCCCAAG AGCTGTACCC ATGGTAGAGG CAGTGGTAGC TTTGGTTCTT
GTGGACCAGT TGATGGCACA ATATGCTCAG TGTAATCTGT TTCCCGTAAA CTCAGATTTG CAAGAACCCA TGGTGCCCGT
TTTAGAGCCA GAAGAAGTAC CATTCTGA

>Vigan.08G107000.01
MASSLSTKPF STDALSAFAS LNSDLRSLSP GYLRLSLRPR LPKRLQIQAA GSTYGNHFRV TTYGESHGGG VGCVIDGCPP
RIPLSEADMQ VDLDRRRPGQ SRITTPRKET DTCKIFSGVS EGLTTGTPIH VFVPNTDQRG NDYSEMSLAY RPSHADATYD
MKYGVRSVQG GGRSSARETI GRVASGAVAK KILKDFSGTE ILAYVSQVHK VVLPEDVIDH DTLMLHQIES NIVRCPDPEY
AEKMIAAIDA VRVRGDSVGG VVTCIVRNCP RGLGSPVFDK LEAELAKAVM SLPATKGFQF GSGFAGTFLT GSEHNDEFYI
DEHGRTRTRT NRSGGIQGGI SNGEIINMRI AFKPTSTIGK KQHTVTRDKK ETELIARGRH DPCVVPRAVP MVEAVVALVL
VDQLMAQYAQ CNLFPVNSDL QEPMVPVLEP EEVPF*