GBrowse Details

Vigan.08G108600.01

Basic Information:
Name: Vigan.08G108600.01
Multiple alignment
Variant Information
Position: Chr08:9183072..9184603 (+ strand)
Length: 1532
Functional Information:
Description: Similar to Uncharacterized protein. [M1AIB8, Solanum tuberosum]
GO: Cellular Component: mitochondrial membrane (GO:0031966)
InterPro: Cytochrome c oxidase assembly protein COX16 (IPR020164)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.88,3.74,3.69,4.16,9.64,5.72,9.26,4.31
Arabidopsis thaliana homolog: AT4G14145.1
Automatic updates:
Name: NM_001252876 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100814113 (LOC100814113), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:9183072..9183648 (+ strand)
Length: 577
Type: five_prime_UTR
Position: Chr08:9183649..9183809 (+ strand)
Length: 161
Type: CDS
Position: Chr08:9184123..9184249 (+ strand)
Length: 127
Type: CDS
Position: Chr08:9184326..9184403 (+ strand)
Length: 78
Type: CDS
Position: Chr08:9184404..9184603 (+ strand)
Length: 200
Type: three_prime_UTR


>Vigan.08G108600.01
GGAGGGGATT ATTTAGAAAA CAGAACACTA CCATTTAAAG TTGTTTCTTC GGAACAAAAT TACAGAGAAA AAATAAAGAA
GCGAAAATCT TTGGTGTTTG AGAAGGACTT GTGTTGTGAA GAGGTAAGTT TTATTGTTCT GAATGTTCCT CTTCTTATCT
TACCCTTCTG CTTCCCATAA TTAAATCACT CCCTACACTA TCCAACCAAT CATTTCAATT CATTCCCTTT CTGTCCAGAT
CAAATCGTTT CCAAACAATT AATAAAAAAA ATTACATTTT TCATTCCCAA AACTGAATGC CCCAATCTTC TGAACCCTAA
GGTTAGTTAA CAACCGCATA TGGTTGGCGT GAAAGAAGCC TTCTTCAGTT TGTAGTCGCA TCGAGGCTTG TGTGTGTGGC
TGGAGTTTGC GTGTATGTTT TCTTATTGCG ACTCTGTGTG GCTTGAACAT TACATGTTTG ATAGAATGCC AAATCTAGTG
GCATGAATGA ATTGGTAATC GGTTGAGTTT TCTTTTCACT CGTCATGTCA CTAGGCTGAG ATTTCAGGCC AACATTTGAA
TTCTGTGACC AATAATAATG ACTACGGTCC AGAGTGAGGG GGCAGCAAAA GGAACTGCCA CAACTGACAA AGCATTCAAA
AGATGGGGAA GGAGAAGCCC ATTTTTGAGA TACGGCCTTC CTATGATCTC TCTCACTGTC CTCGGCTCAA TAGGCCTTGC
CCAACTCTTG CAAGGGAGCA AGGATATTGC AAGGGTGAAA GATGATCAAG AGTGGGAAAT AATTGAAACA AGAAAAGCAT
TGTCTAGGAC AGGACCAGTG CATGCGTACA ATCCAAAACA GATTTCCTTG GACGATGAGC TAAAGGCTTT GCAACAAAAG
GTGGACATTA ACAGCTATGA ATACAAGAAA ATTCCTAAAC CAAATGAAGG CAATCAAGAC TAGTGTAGAG TTGCGGATTG
GAAACAACTT TTGTCAGAAT TTCTCATGTA CCGTTCTGGA AATAAACTTT TATGGAGTCA AAAGCTAATT CCATCTTGCT
AGTGAAGTTG GTATGGCCCT TCATCTTTAG TGTTTTGACT TTTGCTTACG ACATTATGGG AGTTGAAGTT GAGATAAAAT
TTTGAAATTT GTGTACCAAG GAT

>Vigan.08G108600.01
ATGACTACGG TCCAGAGTGA GGGGGCAGCA AAAGGAACTG CCACAACTGA CAAAGCATTC AAAAGATGGG GAAGGAGAAG
CCCATTTTTG AGATACGGCC TTCCTATGAT CTCTCTCACT GTCCTCGGCT CAATAGGCCT TGCCCAACTC TTGCAAGGGA
GCAAGGATAT TGCAAGGGTG AAAGATGATC AAGAGTGGGA AATAATTGAA ACAAGAAAAG CATTGTCTAG GACAGGACCA
GTGCATGCGT ACAATCCAAA ACAGATTTCC TTGGACGATG AGCTAAAGGC TTTGCAACAA AAGGTGGACA TTAACAGCTA
TGAATACAAG AAAATTCCTA AACCAAATGA AGGCAATCAA GACTAG

>Vigan.08G108600.01
MTTVQSEGAA KGTATTDKAF KRWGRRSPFL RYGLPMISLT VLGSIGLAQL LQGSKDIARV KDDQEWEIIE TRKALSRTGP
VHAYNPKQIS LDDELKALQQ KVDINSYEYK KIPKPNEGNQ D*