GBrowse Details

Vigan.08G109700.01

Basic Information:
Name: Vigan.08G109700.01
Multiple alignment
Variant Information
Position: Chr08:9331581..9333909 (+ strand)
Length: 2329
Functional Information:
Description: Similar to Uncharacterized protein. [I1NHH2, Glycine max]
GO: Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, DNL-type (IPR007853)
Mitochondrial import protein TIM15 (IPR024158)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:99.45,84.73,6.56,12.48,11.73,19.00,26.47,10.23
Arabidopsis thaliana homolog: AT3G54826.1
Automatic updates:
Name: NM_001249923 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527239 (LOC100527239), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:9331581..9331728 (+ strand)
Length: 148
Type: five_prime_UTR
Position: Chr08:9331729..9331816 (+ strand)
Length: 88
Type: CDS
Position: Chr08:9333061..9333554 (+ strand)
Length: 494
Type: CDS
Position: Chr08:9333555..9333909 (+ strand)
Length: 355
Type: three_prime_UTR


>Vigan.08G109700.01
ATTTGAAGCA CAAAAGATGA GAGGGGGAGT GGATTCAACA AGTGGGGGAG TGTAACAGTA AAGGCCTATA AGAAAAGACA
GATCCCAAAA TTCATAGAAA CTAAGAAGAG CCCAAAATCT CAGAAAGTAA CAGGTTTGGG CATTACCCAT GGCCTTGGGA
GCTATGGCGG CAAGGATGTT GCAGAGGCGA TTCATCTCAA TCTTCCCGAG ACAAACCTAT CACCCCATTA TTCAAGAATC
TTCTTGGTAT TATCCTACTG GTGCAATATT AAACAGATTT GGATTCCATC AAAGGGGGGT CGCTACAACT ACAAATCCAA
TCAAACCTGT TTGTGAAGAT GTAGAAAATA GTGAAACTGA CACCTTAAAA CTAAGTCCAA ACCCTGATAA TGTTGCTACA
TCCATTAGTG TTAATGATGC CTCTGTACAG TTTTCTGCCA AGTCAAGTTT GAAGACATCT TCAAGGCATG ATCTCGCCAT
GATTTTCACC TGCAAGGTGT GTGAAACGAG ATCCATTAAG ACAGTTTGTC GTGAGTCATA CGAGAAAGGT GTAGTGGTGG
CAAGATGTGG GGGGTGTAAT AACCTTCACC TGATTGCAGA TCACCTTGGG TGGTTTGGTG AACCAGGAAG CGTTGAAGAC
TTCTTGGCTT CTCGTGGAGA AGAAGTGAAA AGAGGTTCAG CTGACACACT GAATCTTACG TTGGAAGATT TAGCTGGAAA
ACAACCTTGA AAGCTACACT CTCACCTAGT ATGTGTTCTG CAATAGGGTG TCACAGAATG TTTGGAAGTG CAAGTCAGTG
TAACGATAGT TGATAAGAGC AATCTTAGTA AGACACTCTT TTGAGCAAAA TATTTTTTAT TCCTCGAAAT TTCTAATTAC
TAAATTTTGG AGATGTCATT TCGTATAAAA CAGTTTCATG ATGTTTTGTT CTTTTAGATA AAAAAATTGT TCTAAAGTTA
AGCTTGGGAT GATGGTAAGG TGTCTTTGAC TTTGGGGCAT GTGGTACCGA GGAGTGTTCT TTAGCTTGAC AATTCTTAAT
ACTGGTTAAT AACCATTATG ACCCATAAAT AATGAAAAAA TAAGC

>Vigan.08G109700.01
ATGGCCTTGG GAGCTATGGC GGCAAGGATG TTGCAGAGGC GATTCATCTC AATCTTCCCG AGACAAACCT ATCACCCCAT
TATTCAAGAA TCTTCTTGGT ATTATCCTAC TGGTGCAATA TTAAACAGAT TTGGATTCCA TCAAAGGGGG GTCGCTACAA
CTACAAATCC AATCAAACCT GTTTGTGAAG ATGTAGAAAA TAGTGAAACT GACACCTTAA AACTAAGTCC AAACCCTGAT
AATGTTGCTA CATCCATTAG TGTTAATGAT GCCTCTGTAC AGTTTTCTGC CAAGTCAAGT TTGAAGACAT CTTCAAGGCA
TGATCTCGCC ATGATTTTCA CCTGCAAGGT GTGTGAAACG AGATCCATTA AGACAGTTTG TCGTGAGTCA TACGAGAAAG
GTGTAGTGGT GGCAAGATGT GGGGGGTGTA ATAACCTTCA CCTGATTGCA GATCACCTTG GGTGGTTTGG TGAACCAGGA
AGCGTTGAAG ACTTCTTGGC TTCTCGTGGA GAAGAAGTGA AAAGAGGTTC AGCTGACACA CTGAATCTTA CGTTGGAAGA
TTTAGCTGGA AAACAACCTT GA

>Vigan.08G109700.01
MALGAMAARM LQRRFISIFP RQTYHPIIQE SSWYYPTGAI LNRFGFHQRG VATTTNPIKP VCEDVENSET DTLKLSPNPD
NVATSISVND ASVQFSAKSS LKTSSRHDLA MIFTCKVCET RSIKTVCRES YEKGVVVARC GGCNNLHLIA DHLGWFGEPG
SVEDFLASRG EEVKRGSADT LNLTLEDLAG KQP*