VIGGS:GBrowse

Vigan.08G113300.01

Basic Information:

Name:	Vigan.08G113300.01 Multiple alignment Variant Information
Position:	Chr08:9780801..9783639 (+ strand)
Length:	2839

Functional Information:

Description:	Similar to Uncharacterized protein. [C6T3I8, Glycine max]
GO:	Biological Process: ATP hydrolysis coupled proton transport (GO:0015991)
	Cellular Component: proton-transporting two-sector ATPase complex, proton-transporting domain (GO:0033177)
	Cellular Component: proton-transporting V-type ATPase, V0 domain (GO:0033179)
	Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078)
InterPro:	V-ATPase proteolipid subunit (IPR000245)
InterPro:	V-ATPase proteolipid subunit C-like domain (IPR002379)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:53.51,24.64,19.74,15.53,11.41,28.47,14.35,19.50

Automatic updates:

Name:	NM_001249089 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527177 (LOC100527177), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:9780801..9780979 (+ strand)
Length:	179
Type:	five_prime_UTR

Position:	Chr08:9780980..9781104 (+ strand)
Length:	125
Type:	CDS

Position:	Chr08:9781194..9781271 (+ strand)
Length:	78
Type:	CDS

Position:	Chr08:9782878..9783048 (+ strand)
Length:	171
Type:	CDS

Position:	Chr08:9783159..9783327 (+ strand)
Length:	169
Type:	CDS

Position:	Chr08:9783328..9783639 (+ strand)
Length:	312
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G113300.01
CTAACATTAC TCTCGGCCAC GTGGCCATGT TATGGTCACG TTGATTATTC ACATTAATTC AATATTATCT AAACGACACT
GCGTTTCGTC CATTCCAATT TGGCTCCGTG GTTAACCGAA CAACTCAGAG ATCCAGTCAC AAACATTCAT CGATTCCCTT
CCGTTAGCAA CACGTCACAA TGTCTGAGAC GATTGTGGCA CATTCGAGTT CTTGGAGCAG GGCACTTGTC GCGATCTCGC
CCTATACCTT CTCCGCCATC GGTATCGCGG TCGCAATCGG CGTCTCCGTC CTCGGCGCCG CCTGGGGGAT CTACATCACC
GGTAGTAGCT TGATCGGCGC TGCAATCAAG GCTCCTCGAA TCACTTCCAA AAATCTCATT AGTGTAATCT TCTGTGAAGC
TGTTGCTATA TATGGTGTTA TTGTGGCTAT TATTCTTCAA ACAAAATTAG AAAGCGTTCC AGCAGCAAAT ATCTATGACC
CAGAGTCTCT TAGGGCTGGA TATGCAATCT TTGCTTCTGG ATTAATCGTG GGCTTCGCAA ATCTTGTTTG TGGGTTGTGT
GTAGGAATAA TTGGAAGCAG CTGTGCATTA TCTGATGCTC AGAATTCCTC CCTCTTCGTG AAAATTCTTG TGATTGAGAT
CTTTGGTAGC GCGCTTGGGC TATTTGGAGT GATTGTTGGA ATTATTATGT CAGCACAAGC AACATGGCCA ACCAAAGTTT
AGTTTCCACT TTATCAGAAT GTGGTGTGGG AATGCAATTA TGGTAGAGCG CAATATATCT TCTGTACTGC TCGGGATTAA
ATTTTTCTGT TTCCTGTTGG TAGGAATGTA AAATCCAGCG TAATAGTTTA CCTTCATTAC AAATGTAGGC TGTATTATTT
ACAAATGAGT TGTTAGCAGG TCTTGTGTAT CGTCAGATAT GTCAGTCTGT TGGTTGAATT TCAATGTTTT TGGAGGACCA
AATCTTTTAT AATCAATAAG AAAATTGAAT TTATTTGGGC TTGTGAATAA AGTCAACTAG CAGTTTTTTT GAAA

[show][hide][copy]CDS

>Vigan.08G113300.01
ATGTCTGAGA CGATTGTGGC ACATTCGAGT TCTTGGAGCA GGGCACTTGT CGCGATCTCG CCCTATACCT TCTCCGCCAT
CGGTATCGCG GTCGCAATCG GCGTCTCCGT CCTCGGCGCC GCCTGGGGGA TCTACATCAC CGGTAGTAGC TTGATCGGCG
CTGCAATCAA GGCTCCTCGA ATCACTTCCA AAAATCTCAT TAGTGTAATC TTCTGTGAAG CTGTTGCTAT ATATGGTGTT
ATTGTGGCTA TTATTCTTCA AACAAAATTA GAAAGCGTTC CAGCAGCAAA TATCTATGAC CCAGAGTCTC TTAGGGCTGG
ATATGCAATC TTTGCTTCTG GATTAATCGT GGGCTTCGCA AATCTTGTTT GTGGGTTGTG TGTAGGAATA ATTGGAAGCA
GCTGTGCATT ATCTGATGCT CAGAATTCCT CCCTCTTCGT GAAAATTCTT GTGATTGAGA TCTTTGGTAG CGCGCTTGGG
CTATTTGGAG TGATTGTTGG AATTATTATG TCAGCACAAG CAACATGGCC AACCAAAGTT TAG

[show][hide][copy]PROTEIN

>Vigan.08G113300.01
MSETIVAHSS SWSRALVAIS PYTFSAIGIA VAIGVSVLGA AWGIYITGSS LIGAAIKAPR ITSKNLISVI FCEAVAIYGV
IVAIILQTKL ESVPAANIYD PESLRAGYAI FASGLIVGFA NLVCGLCVGI IGSSCALSDA QNSSLFVKIL VIEIFGSALG
LFGVIVGIIM SAQATWPTKV *