GBrowse Details

Vigan.08G113500.01

Basic Information:
Name: Vigan.08G113500.01
Multiple alignment
Variant Information
Position: Chr08:9785599..9793935 (- strand)
Length: 8337
Functional Information:
Description: Similar to Phosphoenolpyruvate carboxylase. [Q6Q2Z9, Glycine max]
GO: Biological Process: tricarboxylic acid cycle (GO:0006099)
Biological Process: carbon fixation (GO:0015977)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964)
InterPro: Pyruvate/Phosphoenolpyruvate kinase-like domain (IPR015813)
Phosphoenolpyruvate carboxylase, active site (IPR018129)
Phosphoenolpyruvate carboxylase (IPR021135)
Phosphoenolpyruvate carboxylase, bacterial/plant-type (IPR022805)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.61,8.86,22.18,63.91,19.50,39.04,21.38,44.32
Arabidopsis thaliana homolog: AT1G68750.1
Automatic updates:
Name: NM_001250449 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phosphoenolpyruvate carboxylase (PEPC17), mRNA.
PubMed ID: 15299132 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:9785599..9785871 (- strand)
Length: 273
Type: three_prime_UTR
Position: Chr08:9785872..9786696 (- strand)
Length: 825
Type: CDS
Position: Chr08:9786898..9787104 (- strand)
Length: 207
Type: CDS
Position: Chr08:9787195..9787321 (- strand)
Length: 127
Type: CDS
Position: Chr08:9787627..9787715 (- strand)
Length: 89
Type: CDS
Position: Chr08:9788043..9788141 (- strand)
Length: 99
Type: CDS
Position: Chr08:9788945..9789091 (- strand)
Length: 147
Type: CDS
Position: Chr08:9789162..9789263 (- strand)
Length: 102
Type: CDS
Position: Chr08:9789335..9789460 (- strand)
Length: 126
Type: CDS
Position: Chr08:9789601..9789846 (- strand)
Length: 246
Type: CDS
Position: Chr08:9789923..9789990 (- strand)
Length: 68
Type: CDS
Position: Chr08:9790163..9790267 (- strand)
Length: 105
Type: CDS
Position: Chr08:9790732..9790867 (- strand)
Length: 136
Type: CDS
Position: Chr08:9791452..9791547 (- strand)
Length: 96
Type: CDS
Position: Chr08:9791624..9791700 (- strand)
Length: 77
Type: CDS
Position: Chr08:9791786..9791864 (- strand)
Length: 79
Type: CDS
Position: Chr08:9792013..9792081 (- strand)
Length: 69
Type: CDS
Position: Chr08:9792196..9792273 (- strand)
Length: 78
Type: CDS
Position: Chr08:9792593..9792707 (- strand)
Length: 115
Type: CDS
Position: Chr08:9792882..9793045 (- strand)
Length: 164
Type: CDS
Position: Chr08:9793470..9793625 (- strand)
Length: 156
Type: CDS
Position: Chr08:9793626..9793935 (- strand)
Length: 310
Type: five_prime_UTR


>Vigan.08G113500.01
AATAAGAGCA ATAAAGTGAA GAGTGATTAG AGGGTAGGAT CACATGAAAT GAGATGAAAT GAAAGGAGAG ACAGTTACAC
ACATTGATGC CATACAAGTG TACAAGGTTA CAATAGTTGG AGTGTGTTCC ATTCCATTCA CACTTCAATA ACAACCGCTT
GGTTCCTGCT GTGTCTGCTT GCCACATGTT CTTTGTTTCC TTCAACTTTT ACACTGACCC CACTTTCTCT TCTCTACTCT
ACTCTCTCAA TTAATAACAC TCCTCACTCC TTCTCCTTCC TCCATTTCCT ATCTTCCTTC TTTCCTTCCA ATGACTGACA
TCACTGATGA TGTGGCTGAG GAAATCTCCT TCCAGAGCTT CGACGATGAC TGCAGGTTGC TCGGGAATCT CCTCAACGAC
ATTCTCCAGC GCGAGGTTGG CACCAACTTA GTTGACAAGA TCGAAAGGAT TCGAGTCCTT GCTCAGAGTG GTTGTAATAT
GAGGCAGGCG GGTATTTTGA ACATGGCAGA GCTGCTTGAG AAGCAGTTGG CTTCGGAGTT GTCGAAGATG ACACTGGAAG
AAGCTTTCAC CCTTGCTCGT GCCTTCAGCC ATTATCTTAC TTTGATGGGC ATAGCTGAGA CCCATCACAG GGTTCGTAAA
GGAGGGAATG TGGCACAAAT TGCAAAATCT TGCGATGATA TATTTAACCA GCTGGTGCAG GGTGGAGTTT CCCCAGAAGA
ACTTTATGAC ACAGTCTGCA AGCAGGAAGT GGAAATTGTT CTCACGGCTC ATCCCACACA GATTAACCGT CGGACCTTAC
AATTCAAGCA CGTTAGAATC GCTCATCTTT TGGATTATAA TGATCGACCC GATCTTAGCA CTGAAGATCG AGAAATGGTG
ATTGAAGATC TGGTGAGAGA GATAACTTCA ATATGGCAGA CAGATGAACT GAGGCGCCAA AAGCCCACAC CAGTAGACGA
AGCTAGAGCT GGTTTCAACA TTGTGGACCA GTCACTATGG AAAGCTGTCC CTCATTACTT ACGACGTGTT AGCAATGCTC
TAAAGAAGCA TACAGGAAAG CCACTTCCCT TGACCTGCAC TCCCATAAAG TTTGGATCTT GGATGGGAGG TGATAGAGAT
GGGAACCCAA ATGTGACAGC AAAGGTCACA AAAGATGTTT CACTTCTATC TAGATGGATG GCAATTGATC TCTATATAAG
GGAAGTGGAC AGCCTCAGAT TTGAGCTATC CATGAACCAG TGCAGTGATA GGCTGTCAAG ACTGGCACAC GACATTCTAG
AAGCTAAACG TGATAATCCC CGTGAGAATT GGAACCAATC CGTGAATAGA AGTCCCGCAC TCCCAACACA ACTTCCAGCT
AGAGCTCATT TACCTTCCAT TGCTGAAAAT GGTGAATCTC GGCATCCTAG ACTAGACATT CCAGGACCTG ATCACATGCA
ATCTAATCAC AAGGATGGTG GAGCTGCCTT AAGTTCAACT ACATCGAAAA ATGCCAATTC CAATATTCAA TCTCAAGGAA
CAAGTTCAGC AAATTCCAGT GCTTCTTCAG CTACAACTTC ATCTTCTTTT GTTCAAAAGA AATTGTATGC AGAACCCCAG
ACAGGAAAGT CCACTTTTCA GAAGCTTTTA GAGCCAATGC TGCCTCAACT TCCTGGAATT GCTCCGTATA GAATTGTCCT
GGGGAATGTT AAGGATAAGC TTGAGAGAAG TCGTAGACGA TTAGAACTAC TTCTTGAGGA TGTTGCTTGT GACTATGAAC
CTTCGGAGTA CTATGAAACA TCTGATCAGC TTTTGGAACC TCTGCTTCTC TGTTACGAGT CTCTGCAATC ATGTGGATCT
GGGGTGCTAG CTGATGGTCG ACTTGCTGAT TTGATTCGTA GAGTTGCTAC CTTTGGAATG GTGTTGATGA AGCTTGACTT
GCGTCAGGAA TCTGGGAGGC ACGCAGAAGC ACTTGATGCA ATAACAGAGT ATTTAGATAT GGGTACTTAC AGTGAATGGG
ATGAAGAAAA GAAGTTGGAC TTTTTAACAA AAGAACTGAA AGGGAAGAGG CCTCTAGTTC CTCTTAGTAT AGAGGTTCCT
TCTGATGTTA AAGAAGTCTT GGATACATTC CGAATTGCTG CTGAACTAGG AAGTGATTCA CTAGGAGCTT ATGTGATCTC
TATGGCCTCA AATGCAAGTG ATGTCCTTGC AGTAGAGCTT TTGCAGAAGG ATGCACGGCT TGCTGCTATT GGAGAGTCAG
GGAAAGCATG TCCTGGTGGA ACGTTGCGAG TGGTACCTCT GTTTGAAACC GTGAAAGATC TGAGAGGAGC TGGTGCTGTT
ATCCGAAAAC TTTTATCAAT AGACTGGTAC CGTGAACACA TCATTAAGAA CCACAACGGA CATCAAGAGG TTATGGTTGG
ATATTCTGAT TCGGGTAAAG ACGCTGGTCG CTTTACTGCT GCCTGGGAAC TTTTCAAAGC TCAGGAGGAT GTTGTAGCGG
CATGCAATGA TTATGGGATA AAGGTTACAC TATTCCATGG CCGTGGAGGC AGTATTGGTC GTGGTGGAGG GCCAACATAT
CTGGCTATTC AGTCCCAGCC CCCTGGGTCT GTGATGGGAA CCCTTCGGTC TACTGAGCAG GGAGAGATGG TGGAGGCGAA
GTTTGGGTTG CCACAAATAG CTGTTAGACA ACTTGAGATA TACACAACAG CGGTGCTACT TGCAACCCTT CGTCCTCCTA
TTCCACCCAG AGAAGAAAAA TGGCGGAATG TGATGGAAGA GATATCAAAC ATCAGTTGCC AGTGTTACCG CAATGTAGTG
TATGAAAATC CAGAATTCCT GGCCTACTTC CATGAAGCCA CACCAGAGGC AGAACTTGGC TTCCTTAACA TAGGTAGCCG
CCCTGCAAGA AGGAAGAGCT CAAGAGGAAT TGGACACCTT CGTGCAATTC CGTGGCTATT TGCATGGACA CAAACAAGAT
TTGTTCTTCC AGCTTGGCTT GGAGTTGGAG CAGGTTTAAA AGGAGCTTGT GAGAAAGGTC TAACTGAAGA TCTAAAAGCC
ATGTACAAAG AATGGCCATT CTTCCAAAGT ACCATAGACC TGATTGAGAT GGTTTTGGGA AAAGCAGACA TTCCTATAGC
CAAACACTAC GATGAAGTCC TTGTGTCAAA GGAGAGGCAA GAGCTTGGTG GTGAACTAAG AAGTGAGCTC ATGACGGCTG
AAAAGTTTGT ACTAGTGATT AGTGGGCACG AGAAACTTCA GCAGAACAAT AGGAGCTTGA GGAGGCTGAT TGAGAATAGA
CTTCCCTTTC TCAATCCCTT GAACATGTTG CAGGTGGAGA TCCTCAAGAG GTTAAGACGT GATGATGACA ACATTAAAAT
CAGAGATGCT TTGCTTATCA CCATAAATGG AATTGCTGCA GGGATGAAGA ATACAGGTTG ACCTTGTTTC TCAGAGACTA
TACTGTACAA GCCTTCCTCA GTTCCCATGT GTTCACCCTT GTTTTATAAT AGGTTTGCTA AGAAAAGATT AAGACAGCCA
TAATGGCCAT GCTTTGTTCT GTACTCAAAA GATAAATGAT GTGATGCATA ATAAGTTTTT TCAGTATTTC GTAGTCATAA
ATTTTCTGTA CCTAATCGTG CCAACAACAT TTAGTTACTA AGTCATAAGT TACTTCAATA AATTTACGTG GATGTCCAAA
AATTATTTTT CATA

>Vigan.08G113500.01
ATGACTGACA TCACTGATGA TGTGGCTGAG GAAATCTCCT TCCAGAGCTT CGACGATGAC TGCAGGTTGC TCGGGAATCT
CCTCAACGAC ATTCTCCAGC GCGAGGTTGG CACCAACTTA GTTGACAAGA TCGAAAGGAT TCGAGTCCTT GCTCAGAGTG
GTTGTAATAT GAGGCAGGCG GGTATTTTGA ACATGGCAGA GCTGCTTGAG AAGCAGTTGG CTTCGGAGTT GTCGAAGATG
ACACTGGAAG AAGCTTTCAC CCTTGCTCGT GCCTTCAGCC ATTATCTTAC TTTGATGGGC ATAGCTGAGA CCCATCACAG
GGTTCGTAAA GGAGGGAATG TGGCACAAAT TGCAAAATCT TGCGATGATA TATTTAACCA GCTGGTGCAG GGTGGAGTTT
CCCCAGAAGA ACTTTATGAC ACAGTCTGCA AGCAGGAAGT GGAAATTGTT CTCACGGCTC ATCCCACACA GATTAACCGT
CGGACCTTAC AATTCAAGCA CGTTAGAATC GCTCATCTTT TGGATTATAA TGATCGACCC GATCTTAGCA CTGAAGATCG
AGAAATGGTG ATTGAAGATC TGGTGAGAGA GATAACTTCA ATATGGCAGA CAGATGAACT GAGGCGCCAA AAGCCCACAC
CAGTAGACGA AGCTAGAGCT GGTTTCAACA TTGTGGACCA GTCACTATGG AAAGCTGTCC CTCATTACTT ACGACGTGTT
AGCAATGCTC TAAAGAAGCA TACAGGAAAG CCACTTCCCT TGACCTGCAC TCCCATAAAG TTTGGATCTT GGATGGGAGG
TGATAGAGAT GGGAACCCAA ATGTGACAGC AAAGGTCACA AAAGATGTTT CACTTCTATC TAGATGGATG GCAATTGATC
TCTATATAAG GGAAGTGGAC AGCCTCAGAT TTGAGCTATC CATGAACCAG TGCAGTGATA GGCTGTCAAG ACTGGCACAC
GACATTCTAG AAGCTAAACG TGATAATCCC CGTGAGAATT GGAACCAATC CGTGAATAGA AGTCCCGCAC TCCCAACACA
ACTTCCAGCT AGAGCTCATT TACCTTCCAT TGCTGAAAAT GGTGAATCTC GGCATCCTAG ACTAGACATT CCAGGACCTG
ATCACATGCA ATCTAATCAC AAGGATGGTG GAGCTGCCTT AAGTTCAACT ACATCGAAAA ATGCCAATTC CAATATTCAA
TCTCAAGGAA CAAGTTCAGC AAATTCCAGT GCTTCTTCAG CTACAACTTC ATCTTCTTTT GTTCAAAAGA AATTGTATGC
AGAACCCCAG ACAGGAAAGT CCACTTTTCA GAAGCTTTTA GAGCCAATGC TGCCTCAACT TCCTGGAATT GCTCCGTATA
GAATTGTCCT GGGGAATGTT AAGGATAAGC TTGAGAGAAG TCGTAGACGA TTAGAACTAC TTCTTGAGGA TGTTGCTTGT
GACTATGAAC CTTCGGAGTA CTATGAAACA TCTGATCAGC TTTTGGAACC TCTGCTTCTC TGTTACGAGT CTCTGCAATC
ATGTGGATCT GGGGTGCTAG CTGATGGTCG ACTTGCTGAT TTGATTCGTA GAGTTGCTAC CTTTGGAATG GTGTTGATGA
AGCTTGACTT GCGTCAGGAA TCTGGGAGGC ACGCAGAAGC ACTTGATGCA ATAACAGAGT ATTTAGATAT GGGTACTTAC
AGTGAATGGG ATGAAGAAAA GAAGTTGGAC TTTTTAACAA AAGAACTGAA AGGGAAGAGG CCTCTAGTTC CTCTTAGTAT
AGAGGTTCCT TCTGATGTTA AAGAAGTCTT GGATACATTC CGAATTGCTG CTGAACTAGG AAGTGATTCA CTAGGAGCTT
ATGTGATCTC TATGGCCTCA AATGCAAGTG ATGTCCTTGC AGTAGAGCTT TTGCAGAAGG ATGCACGGCT TGCTGCTATT
GGAGAGTCAG GGAAAGCATG TCCTGGTGGA ACGTTGCGAG TGGTACCTCT GTTTGAAACC GTGAAAGATC TGAGAGGAGC
TGGTGCTGTT ATCCGAAAAC TTTTATCAAT AGACTGGTAC CGTGAACACA TCATTAAGAA CCACAACGGA CATCAAGAGG
TTATGGTTGG ATATTCTGAT TCGGGTAAAG ACGCTGGTCG CTTTACTGCT GCCTGGGAAC TTTTCAAAGC TCAGGAGGAT
GTTGTAGCGG CATGCAATGA TTATGGGATA AAGGTTACAC TATTCCATGG CCGTGGAGGC AGTATTGGTC GTGGTGGAGG
GCCAACATAT CTGGCTATTC AGTCCCAGCC CCCTGGGTCT GTGATGGGAA CCCTTCGGTC TACTGAGCAG GGAGAGATGG
TGGAGGCGAA GTTTGGGTTG CCACAAATAG CTGTTAGACA ACTTGAGATA TACACAACAG CGGTGCTACT TGCAACCCTT
CGTCCTCCTA TTCCACCCAG AGAAGAAAAA TGGCGGAATG TGATGGAAGA GATATCAAAC ATCAGTTGCC AGTGTTACCG
CAATGTAGTG TATGAAAATC CAGAATTCCT GGCCTACTTC CATGAAGCCA CACCAGAGGC AGAACTTGGC TTCCTTAACA
TAGGTAGCCG CCCTGCAAGA AGGAAGAGCT CAAGAGGAAT TGGACACCTT CGTGCAATTC CGTGGCTATT TGCATGGACA
CAAACAAGAT TTGTTCTTCC AGCTTGGCTT GGAGTTGGAG CAGGTTTAAA AGGAGCTTGT GAGAAAGGTC TAACTGAAGA
TCTAAAAGCC ATGTACAAAG AATGGCCATT CTTCCAAAGT ACCATAGACC TGATTGAGAT GGTTTTGGGA AAAGCAGACA
TTCCTATAGC CAAACACTAC GATGAAGTCC TTGTGTCAAA GGAGAGGCAA GAGCTTGGTG GTGAACTAAG AAGTGAGCTC
ATGACGGCTG AAAAGTTTGT ACTAGTGATT AGTGGGCACG AGAAACTTCA GCAGAACAAT AGGAGCTTGA GGAGGCTGAT
TGAGAATAGA CTTCCCTTTC TCAATCCCTT GAACATGTTG CAGGTGGAGA TCCTCAAGAG GTTAAGACGT GATGATGACA
ACATTAAAAT CAGAGATGCT TTGCTTATCA CCATAAATGG AATTGCTGCA GGGATGAAGA ATACAGGTTG A

>Vigan.08G113500.01
MTDITDDVAE EISFQSFDDD CRLLGNLLND ILQREVGTNL VDKIERIRVL AQSGCNMRQA GILNMAELLE KQLASELSKM
TLEEAFTLAR AFSHYLTLMG IAETHHRVRK GGNVAQIAKS CDDIFNQLVQ GGVSPEELYD TVCKQEVEIV LTAHPTQINR
RTLQFKHVRI AHLLDYNDRP DLSTEDREMV IEDLVREITS IWQTDELRRQ KPTPVDEARA GFNIVDQSLW KAVPHYLRRV
SNALKKHTGK PLPLTCTPIK FGSWMGGDRD GNPNVTAKVT KDVSLLSRWM AIDLYIREVD SLRFELSMNQ CSDRLSRLAH
DILEAKRDNP RENWNQSVNR SPALPTQLPA RAHLPSIAEN GESRHPRLDI PGPDHMQSNH KDGGAALSST TSKNANSNIQ
SQGTSSANSS ASSATTSSSF VQKKLYAEPQ TGKSTFQKLL EPMLPQLPGI APYRIVLGNV KDKLERSRRR LELLLEDVAC
DYEPSEYYET SDQLLEPLLL CYESLQSCGS GVLADGRLAD LIRRVATFGM VLMKLDLRQE SGRHAEALDA ITEYLDMGTY
SEWDEEKKLD FLTKELKGKR PLVPLSIEVP SDVKEVLDTF RIAAELGSDS LGAYVISMAS NASDVLAVEL LQKDARLAAI
GESGKACPGG TLRVVPLFET VKDLRGAGAV IRKLLSIDWY REHIIKNHNG HQEVMVGYSD SGKDAGRFTA AWELFKAQED
VVAACNDYGI KVTLFHGRGG SIGRGGGPTY LAIQSQPPGS VMGTLRSTEQ GEMVEAKFGL PQIAVRQLEI YTTAVLLATL
RPPIPPREEK WRNVMEEISN ISCQCYRNVV YENPEFLAYF HEATPEAELG FLNIGSRPAR RKSSRGIGHL RAIPWLFAWT
QTRFVLPAWL GVGAGLKGAC EKGLTEDLKA MYKEWPFFQS TIDLIEMVLG KADIPIAKHY DEVLVSKERQ ELGGELRSEL
MTAEKFVLVI SGHEKLQQNN RSLRRLIENR LPFLNPLNML QVEILKRLRR DDDNIKIRDA LLITINGIAA GMKNTG*