GBrowse Details

Vigan.08G122400.01

Basic Information:
Name: Vigan.08G122400.01
Multiple alignment
Variant Information
Position: Chr08:10769800..10775778 (+ strand)
Length: 5979
Functional Information:
Description: Similar to malate dehydrogenase [NADP], chloroplastic. [XP_003536287.1, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: malate metabolic process (GO:0006108)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: malate dehydrogenase activity (GO:0016615)
Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616)
Molecular Function: malate dehydrogenase (NADP+) activity (GO:0046554)
InterPro: Lactate/malate dehydrogenase, N-terminal (IPR001236)
Malate dehydrogenase, active site (IPR001252)
Malate dehydrogenase, type 2 (IPR010945)
Malate dehydrogenase, NADP-dependent, plants (IPR011273)
Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (IPR015955)
NAD(P)-binding domain (IPR016040)
Lactate/malate dehydrogenase, C-terminal (IPR022383)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:62.11,23.61,41.62,91.01,30.79,34.97,11.96,35.81
Arabidopsis thaliana homolog: AT5G58330.1
Automatic updates:
Name: NM_001369219 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max malate dehydrogenase [NADP], chloroplastic (LOC100305890), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:10769800..10770105 (+ strand)
Length: 306
Type: five_prime_UTR
Position: Chr08:10770106..10770263 (+ strand)
Length: 158
Type: CDS
Position: Chr08:10770347..10770437 (+ strand)
Length: 91
Type: CDS
Position: Chr08:10771165..10771251 (+ strand)
Length: 87
Type: CDS
Position: Chr08:10771946..10772030 (+ strand)
Length: 85
Type: CDS
Position: Chr08:10773161..10773342 (+ strand)
Length: 182
Type: CDS
Position: Chr08:10773430..10773500 (+ strand)
Length: 71
Type: CDS
Position: Chr08:10773582..10773672 (+ strand)
Length: 91
Type: CDS
Position: Chr08:10773766..10773840 (+ strand)
Length: 75
Type: CDS
Position: Chr08:10773933..10774034 (+ strand)
Length: 102
Type: CDS
Position: Chr08:10774138..10774260 (+ strand)
Length: 123
Type: CDS
Position: Chr08:10774493..10774561 (+ strand)
Length: 69
Type: CDS
Position: Chr08:10774649..10774717 (+ strand)
Length: 69
Type: CDS
Position: Chr08:10775288..10775341 (+ strand)
Length: 54
Type: CDS
Position: Chr08:10775417..10775470 (+ strand)
Length: 54
Type: CDS
Position: Chr08:10775471..10775778 (+ strand)
Length: 308
Type: three_prime_UTR


>Vigan.08G122400.01
CAATAATTTG TCAGAGTAAG GAGATTAATT TGACGATAGG CCATGCCTGA CATGTGTCAT GTCCATGGCC TTATAATGAG
TTTCAAATGA TCCTCTTCGT CTCTTGCCCT CCAATTTTAC CTTCCATTTT CTACTTATCT CCCCCCCACC TTGCTATCCG
TGAACCAAAC GTTATCTCAC TTCGTCTTTG CTTTGTATGC ACATACCCTT TACAAAGTTC TTCATAAATC TTCATTTTAC
TCTTCCATAA GCAGAAAAGG TGCCTTTTTT TTACACTTCT TCTGAGACTT TCTGTGCTGT GCTGCCATGG CTGTGACACA
CTTCAACCCC ACTTGCTCAA AACCCCGTCT TCACTCATCC CAGCTCTCTT TCCTATCAAG GACTCTCCCC ATACACCGCC
ACTGTTCTTT TGCGCCACTT CATAGAACTC AACATGCTAG GATTTCCTGC TCTGTTGCCC CGAATGAAGT GCAGGTGCCA
GCTGTGACAA CCCTGGATCC TAAGGGTAAG GCTGAGTGCT ATGGTGTCTT CTGCCTTACC TATGATTTGA GGGCTGAAGA
AGAGACAAGA TCCTGGAAGA AATTAATTAA CATTGCAGTG TCAGGTGCTG CTGGAATGAT TGCAAATCAT CTACTTTTCA
AACTTGCATC TGGTGAAGTT TTTGGTCCTG ATCAACCTGT TGCTCTCAAG TTACTGGGAT CAGAACGGTC AATCCAAGCT
CTTGAAGGTG TTGCAATGGA ACTGGAGGAC TCTTTGTTTC CTTTGTTAAG GGAGGTGAGT ATTGGTATTG ATCCTTATGA
AGTGTTCCAA GATGCAGAAT GGGCTCTGCT AATAGGTGCA AAGCCTCGAG GACCTGGAAT GGAGCGAGCA GACTTGTTAG
ACATAAATGG ACAGATTTAT GCAGCGCAGG GAAGAGCACT AAATGCCGTG GCCTCCCGCA ATGTCAAAGT TATAGTAGTG
GGAAACCCTT GCAATACAAA TGCATTAATA TGCTTGAAGA ATGCTCCTAA CATTCCTGCA AAAAATTTCC ATGCTTTGAC
TCGCTTAGAC GAGAACAGAG CAAAATGTCA GCTAGCCCTC AAGGCAGGTG TCTTCTATGA TAAAGTGTCA AATGTGACAA
TATGGGGAAA CCACTCAACT ACTCAGGTCC CCGACTTCTT AAATGCTAAA ATTGATGGTT TGCCAGTCAA AGAGGTGGTT
AAGGATCATA GGTGGTTGGA GGAAGAGTTC ACTGAAAAGG TTCAAAAGAG AGGTGGTGCA CTTATTCAAA AATGGGGAAG
ATCATCGGCA GCATCAACTT CTGTATCAAT TGTTGATGCC ATCCGATCTT TAGTAACTCC TACTCCTGAG GGTGATTGGT
TTTCTTCTGG TGTATATAGC AATGGAAATC CTTATGGAAT AGCTGAGGGT ATTGTTTTCA GTATGCCATG TCGATCAAAG
GGCGATGGTG ATTACGAACT TGTGAAGGAT GTCATATTTG ATGACTACCT CCGGCAGCGG ATAAAAAAGA CTGAAGCTGA
GTTGTTGGCT GAGAAGAGAT GTGTGGCTCA CCTAACGGGC GAGGGAATTG CTGTTTGTGA TCTACCTGGT GATACCATGC
TCCCAGGAGA AATGTAACAA GCCTTCCTCC TTAATGCCAA AGCAGATACT GAAATTGGTG TCTTATAAGG TACTAGTTAG
GGAATCAATA AATACAATGT TTTTATTGTG AATCATGATG GGATACCTTG GTAAGTTTTA TATTTATCTC TAAAAAGAGT
CCATTTTGAT TCCTTAACAA GTGGCTTAGG ACATGGGTTA GCATTCTCTT GTTGGAATAA AATCACAATA ATTGATGTAG
AAGTATGGGA TATGAATGTA AGAAATGAAT AAGTAATATC AATAAGAAGA GTTTGGAAAC ATTCATTTGA TTTTTAAACA
ACAAA

>Vigan.08G122400.01
ATGGCTGTGA CACACTTCAA CCCCACTTGC TCAAAACCCC GTCTTCACTC ATCCCAGCTC TCTTTCCTAT CAAGGACTCT
CCCCATACAC CGCCACTGTT CTTTTGCGCC ACTTCATAGA ACTCAACATG CTAGGATTTC CTGCTCTGTT GCCCCGAATG
AAGTGCAGGT GCCAGCTGTG ACAACCCTGG ATCCTAAGGG TAAGGCTGAG TGCTATGGTG TCTTCTGCCT TACCTATGAT
TTGAGGGCTG AAGAAGAGAC AAGATCCTGG AAGAAATTAA TTAACATTGC AGTGTCAGGT GCTGCTGGAA TGATTGCAAA
TCATCTACTT TTCAAACTTG CATCTGGTGA AGTTTTTGGT CCTGATCAAC CTGTTGCTCT CAAGTTACTG GGATCAGAAC
GGTCAATCCA AGCTCTTGAA GGTGTTGCAA TGGAACTGGA GGACTCTTTG TTTCCTTTGT TAAGGGAGGT GAGTATTGGT
ATTGATCCTT ATGAAGTGTT CCAAGATGCA GAATGGGCTC TGCTAATAGG TGCAAAGCCT CGAGGACCTG GAATGGAGCG
AGCAGACTTG TTAGACATAA ATGGACAGAT TTATGCAGCG CAGGGAAGAG CACTAAATGC CGTGGCCTCC CGCAATGTCA
AAGTTATAGT AGTGGGAAAC CCTTGCAATA CAAATGCATT AATATGCTTG AAGAATGCTC CTAACATTCC TGCAAAAAAT
TTCCATGCTT TGACTCGCTT AGACGAGAAC AGAGCAAAAT GTCAGCTAGC CCTCAAGGCA GGTGTCTTCT ATGATAAAGT
GTCAAATGTG ACAATATGGG GAAACCACTC AACTACTCAG GTCCCCGACT TCTTAAATGC TAAAATTGAT GGTTTGCCAG
TCAAAGAGGT GGTTAAGGAT CATAGGTGGT TGGAGGAAGA GTTCACTGAA AAGGTTCAAA AGAGAGGTGG TGCACTTATT
CAAAAATGGG GAAGATCATC GGCAGCATCA ACTTCTGTAT CAATTGTTGA TGCCATCCGA TCTTTAGTAA CTCCTACTCC
TGAGGGTGAT TGGTTTTCTT CTGGTGTATA TAGCAATGGA AATCCTTATG GAATAGCTGA GGGTATTGTT TTCAGTATGC
CATGTCGATC AAAGGGCGAT GGTGATTACG AACTTGTGAA GGATGTCATA TTTGATGACT ACCTCCGGCA GCGGATAAAA
AAGACTGAAG CTGAGTTGTT GGCTGAGAAG AGATGTGTGG CTCACCTAAC GGGCGAGGGA ATTGCTGTTT GTGATCTACC
TGGTGATACC ATGCTCCCAG GAGAAATGTA A

>Vigan.08G122400.01
MAVTHFNPTC SKPRLHSSQL SFLSRTLPIH RHCSFAPLHR TQHARISCSV APNEVQVPAV TTLDPKGKAE CYGVFCLTYD
LRAEEETRSW KKLINIAVSG AAGMIANHLL FKLASGEVFG PDQPVALKLL GSERSIQALE GVAMELEDSL FPLLREVSIG
IDPYEVFQDA EWALLIGAKP RGPGMERADL LDINGQIYAA QGRALNAVAS RNVKVIVVGN PCNTNALICL KNAPNIPAKN
FHALTRLDEN RAKCQLALKA GVFYDKVSNV TIWGNHSTTQ VPDFLNAKID GLPVKEVVKD HRWLEEEFTE KVQKRGGALI
QKWGRSSAAS TSVSIVDAIR SLVTPTPEGD WFSSGVYSNG NPYGIAEGIV FSMPCRSKGD GDYELVKDVI FDDYLRQRIK
KTEAELLAEK RCVAHLTGEG IAVCDLPGDT MLPGEM*