VIGGS:GBrowse

Vigan.08G122800.01

Basic Information:

Name:	Vigan.08G122800.01 Multiple alignment Variant Information
Position:	Chr08:10818519..10821437 (+ strand)
Length:	2919

Functional Information:

Description:	Similar to Uncharacterized protein. [C6T0S9, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:129.45,55.90,3.79,2.91,2.83,4.28,5.67,4.48

Automatic updates:

Name:	BT091034 NCBI(nuccore)
Organism:	Glycine max
Description:	Soybean clone JCVI-FLGm-6E6 unknown mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:10818519..10818813 (+ strand)
Length:	295
Type:	five_prime_UTR

Position:	Chr08:10818814..10818961 (+ strand)
Length:	148
Type:	CDS

Position:	Chr08:10820060..10820128 (+ strand)
Length:	69
Type:	CDS

Position:	Chr08:10820383..10820448 (+ strand)
Length:	66
Type:	CDS

Position:	Chr08:10820585..10820706 (+ strand)
Length:	122
Type:	CDS

Position:	Chr08:10820808..10820936 (+ strand)
Length:	129
Type:	CDS

Position:	Chr08:10821054..10821158 (+ strand)
Length:	105
Type:	CDS

Position:	Chr08:10821159..10821437 (+ strand)
Length:	279
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G122800.01
CGTGAACTCA ATCCAATCTC ATTCTTAATA AATTAAAAAA AAAAAGAAGA AAAAGTGCAC AAGGAAGAAA GAGGACATTT
GTCCTAACCA TTGTGAATTT TGATCTTCTG GACCAAACTC TCAACCGCCT GAGCTATCTT TCCAAACTCA CCTCTTTCTC
TCATATTCAA ACAAAAATCT TTGCTTTCTC AATTCTTCAT CCTTTTTCTT TTTCAATTCT TCACCCTGAA AAAGGGAGAG
ACAAGACAAT CATGGTCCAG TTTTGAATTA AGGTGGTAAA AGACAGAAAC AAAACATGGG TTCTGCTTCA AGAGTTGGCA
GTAGCAGCTA CGATTACTCC TTCAAGGTTC TTTTGATTGG TGATTCTGCT GTTGGCAAGA GTAGTCTTCT CCTCAGCTTC
ATCTCCAATT CTAACTCTAT CCATGATCTC TCCCCCACCA TTGGTGTGGA TTTCAAGATA AAGTTTTTCA CAGTTGCTGG
TAAGAGACTG AAGCTCACTA TTTGGGACAC AGCTGGTCAA GAGAGGTTTG GAACAGTAAT AAGTTCTTAT TACAGAGGTG
CACATGGAAT CATTCTTGTC TATGATGTGA CACGACGCGA GACATTTACA AATCTCATCG ATATATGGGC AAAAGAAGTT
GAGCTTTACT CTACTAATCA TGATAGCATC AAAATTCTTG TTGGAAATAA GGTGGATAAG GAGAGTGAAA GAGCCGTAAG
CAAAGAAGAG GGAATGGCTC TTGCACAGCA ACATAGATGC TTGTTCCTAG AGTGTAGTGC TAAAACTAGA GAAAATGTTC
AGCAATGCTT TAATGATCTC TCATTGAAGA TATTAGATGT GCCAGGTTTA AGGGAAAAGG GGTCTCTTGC AGTGAGAAGG
CAAAATCAAA AACAGTTGTA TGAGACATCT CAAAGAGGTG GTTGCTGTTC TTAGTAAATA TGCAGCACCA TGATATGTTT
AATAGATTTT TCAATAGGGA TACTATAGTT ACTATAGCAG GGTTTTGTAT CATATCAATT GTCACATTCA GATAGTTTGG
ATGATCATAT GCTCCAGCCT ATTTCCATAA CTCTCACAAG AGGATGCTTG AGATGGATAT TTCCATAATT TTGAATTTTT
AGTTTTATTA TGTGACATTT TTACTTTCAT GTTAGGTTCT TCTGGACAGG ATTCAAACTC TACCACTTGT GACCATATGT
ATAAAAGAAA AAT

[show][hide][copy]CDS

>Vigan.08G122800.01
ATGGGTTCTG CTTCAAGAGT TGGCAGTAGC AGCTACGATT ACTCCTTCAA GGTTCTTTTG ATTGGTGATT CTGCTGTTGG
CAAGAGTAGT CTTCTCCTCA GCTTCATCTC CAATTCTAAC TCTATCCATG ATCTCTCCCC CACCATTGGT GTGGATTTCA
AGATAAAGTT TTTCACAGTT GCTGGTAAGA GACTGAAGCT CACTATTTGG GACACAGCTG GTCAAGAGAG GTTTGGAACA
GTAATAAGTT CTTATTACAG AGGTGCACAT GGAATCATTC TTGTCTATGA TGTGACACGA CGCGAGACAT TTACAAATCT
CATCGATATA TGGGCAAAAG AAGTTGAGCT TTACTCTACT AATCATGATA GCATCAAAAT TCTTGTTGGA AATAAGGTGG
ATAAGGAGAG TGAAAGAGCC GTAAGCAAAG AAGAGGGAAT GGCTCTTGCA CAGCAACATA GATGCTTGTT CCTAGAGTGT
AGTGCTAAAA CTAGAGAAAA TGTTCAGCAA TGCTTTAATG ATCTCTCATT GAAGATATTA GATGTGCCAG GTTTAAGGGA
AAAGGGGTCT CTTGCAGTGA GAAGGCAAAA TCAAAAACAG TTGTATGAGA CATCTCAAAG AGGTGGTTGC TGTTCTTAG

[show][hide][copy]PROTEIN

>Vigan.08G122800.01
MGSASRVGSS SYDYSFKVLL IGDSAVGKSS LLLSFISNSN SIHDLSPTIG VDFKIKFFTV AGKRLKLTIW DTAGQERFGT
VISSYYRGAH GIILVYDVTR RETFTNLIDI WAKEVELYST NHDSIKILVG NKVDKESERA VSKEEGMALA QQHRCLFLEC
SAKTRENVQQ CFNDLSLKIL DVPGLREKGS LAVRRQNQKQ LYETSQRGGC CS*