GBrowse Details

Vigan.08G124300.01

Basic Information:
Name: Vigan.08G124300.01
Multiple alignment
Variant Information
Position: Chr08:10933071..10937088 (+ strand)
Length: 4018
Functional Information:
Description: Similar to Uncharacterized protein. [I1NHU0, Glycine max]
GO: Molecular Function: hydrolase activity (GO:0016787)
InterPro: NUDIX hydrolase domain (IPR000086)
NUDIX hydrolase domain-like (IPR015797)
NUDIX hydrolase, conserved site (IPR020084)
NUDIX hydrolase (IPR020476)
RNA pyrophosphohydrolase RppH (IPR022927)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:90.50,96.00,43.36,47.96,50.62,68.19,30.48,36.72
Arabidopsis thaliana homolog: AT3G10620.1
Automatic updates:
Name: NM_001251637 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499956 (LOC100499956), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:10933071..10933126 (+ strand)
Length: 56
Type: five_prime_UTR
Position: Chr08:10933127..10933312 (+ strand)
Length: 186
Type: CDS
Position: Chr08:10933398..10933448 (+ strand)
Length: 51
Type: CDS
Position: Chr08:10934034..10934126 (+ strand)
Length: 93
Type: CDS
Position: Chr08:10936138..10936232 (+ strand)
Length: 95
Type: CDS
Position: Chr08:10936492..10936606 (+ strand)
Length: 115
Type: CDS
Position: Chr08:10936709..10936774 (+ strand)
Length: 66
Type: CDS
Position: Chr08:10936775..10937088 (+ strand)
Length: 314
Type: three_prime_UTR


>Vigan.08G124300.01
GGCCCATTAT AAAGCTATTA TTTTGGTACT GTTGTTTCTC CTTTTCTTCT CTCCTAATGG CTTTGTGCCG ATTCGCTTAT
TGTTCCCCTG CTTCATCTGC TCCCAAATTC ATTCGTTTCC CGAAATACCC TTCAAAACAC GTTAAATTCT CTTTGCTGCC
GTTCTCATTC GCAACGATGG AAGCTCCTCC AGAAGGTTAC CGCAGGAACG TTGGTATCTG TCTCATGAAC GCTCACAAGA
AGATTTTCGC GGCTTCGAGG CTCGACATTC CCAATGCTTG GCAAATGCCG CAGGGTGGTA TTGATGAAGG TGAGGATCCA
AGAAATGCAG CTATCAGGGA ATTAAGAGAA GAGACGGGAG TTAATTCGGC CGAAGTGATC GCAGAGGTAC CATATTGGTT
AACTTATGAT TTCCCACCGA AAGTGAGGGA CAAATTAAAT ATTCAGTGGG GATCTGATTG GAAGGGTCAG GCACAGAAAT
GGTTTCTTTT AAAGTTCACT GGGCAAGATC AAGAAATCAA TCTTCTGGGT GATGGCACTG AGAAAGCTGA ATTTGGGGAA
TGGTCATGGA TATCACCTGA ACAAATAATT GATCTTGCAG TAGATTTCAA AAAGCCTGTC TACAAGGAAG TCCTAGCAGA
GTTTGCTCCA TATTTCCAAT AGTCTTATCT CTGCCAGAAA TTGTTATGGC TTTCCAATGA CAGTGCTTTT GGTGATTCAG
AGGTTGTTTT TAAGAAGAAT GTATTCCAAA TAAACTACCT AGACACGCGA AGAGAGCTAT TTATGTATGT CCGAGTGAAA
TATATATTAT GGTAGAAATT GGCATGTCAG GAATTGCATC TTTCCACTTC CTTTTTTTCA TGATGAAACA TGGCACGTAT
TTTACCGTAT GAAATGAGTT TTGTGATTAC TAACATACAA ATCCTGTCCT TTTGTGAACG CAGTAATAGT AATAAGATTT
CTGTCGAAAG TTAAAT

>Vigan.08G124300.01
ATGGCTTTGT GCCGATTCGC TTATTGTTCC CCTGCTTCAT CTGCTCCCAA ATTCATTCGT TTCCCGAAAT ACCCTTCAAA
ACACGTTAAA TTCTCTTTGC TGCCGTTCTC ATTCGCAACG ATGGAAGCTC CTCCAGAAGG TTACCGCAGG AACGTTGGTA
TCTGTCTCAT GAACGCTCAC AAGAAGATTT TCGCGGCTTC GAGGCTCGAC ATTCCCAATG CTTGGCAAAT GCCGCAGGGT
GGTATTGATG AAGGTGAGGA TCCAAGAAAT GCAGCTATCA GGGAATTAAG AGAAGAGACG GGAGTTAATT CGGCCGAAGT
GATCGCAGAG GTACCATATT GGTTAACTTA TGATTTCCCA CCGAAAGTGA GGGACAAATT AAATATTCAG TGGGGATCTG
ATTGGAAGGG TCAGGCACAG AAATGGTTTC TTTTAAAGTT CACTGGGCAA GATCAAGAAA TCAATCTTCT GGGTGATGGC
ACTGAGAAAG CTGAATTTGG GGAATGGTCA TGGATATCAC CTGAACAAAT AATTGATCTT GCAGTAGATT TCAAAAAGCC
TGTCTACAAG GAAGTCCTAG CAGAGTTTGC TCCATATTTC CAATAG

>Vigan.08G124300.01
MALCRFAYCS PASSAPKFIR FPKYPSKHVK FSLLPFSFAT MEAPPEGYRR NVGICLMNAH KKIFAASRLD IPNAWQMPQG
GIDEGEDPRN AAIRELREET GVNSAEVIAE VPYWLTYDFP PKVRDKLNIQ WGSDWKGQAQ KWFLLKFTGQ DQEINLLGDG
TEKAEFGEWS WISPEQIIDL AVDFKKPVYK EVLAEFAPYF Q*