GBrowse Details

Vigan.08G129200.01

Basic Information:
Name: Vigan.08G129200.01
Multiple alignment
Variant Information
Position: Chr08:11343059..11350934 (+ strand)
Length: 7876
Functional Information:
Description: Similar to polyadenylate-binding protein 2-like isoform X1. [XP_004495249.1, Cicer arietinum]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:153.73,91.72,42.98,41.62,52.83,33.26,53.31,37.59
Automatic updates:
Name: NM_001248545 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RNA recognition motif-containing protein (LOC100527139), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250688 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RRM domain-containing protein (LOC100527545), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:11343059..11343133 (+ strand)
Length: 75
Type: five_prime_UTR
Position: Chr08:11343134..11343247 (+ strand)
Length: 114
Type: CDS
Position: Chr08:11343339..11343441 (+ strand)
Length: 103
Type: CDS
Position: Chr08:11343543..11343613 (+ strand)
Length: 71
Type: CDS
Position: Chr08:11349134..11349325 (+ strand)
Length: 192
Type: CDS
Position: Chr08:11349415..11349533 (+ strand)
Length: 119
Type: CDS
Position: Chr08:11350434..11350479 (+ strand)
Length: 46
Type: CDS
Position: Chr08:11350480..11350934 (+ strand)
Length: 455
Type: three_prime_UTR


>Vigan.08G129200.01
AAGATGAGAG TTAGGGTGTA GGAGAAAGGA AAATAAAAAT CAGTTGGCGT GACAGCGAGC AGAACAGAAG AGGGAATGGA
GCAGGAAGAG CATGAAGTAT ACGGTGCAGA CATTCCCGAC GAGGAGGTTG ACATGGACGC CGACGCCGAC CAACAAGACG
ACCAACTTCC CTCCAATCAC ACAACCAAGG AATTGGAGGA TATGAGGAAG AGGCTGAAGG AGATCGAGGA AGAAGCTAGC
GCGCTTCGCG AAATGCAGGC CAAGGTTGAA AAAGAGATGG GAGCTGTTCA AGATTCGTCT GGTCCATCTG CAACTCAAGC
TGAAAAGGAA GAAGTGGATG CTCGGTCAAT CTATGTTGGT AATGTTGACT ATGCATGTAC GCCTGAAGAA GTCCAGCAGC
ATTTTCAGTC CTGTGGAACT GTGAACAGGG TTACCATACT GACAGACAAA TTTGGTCAAC CAAAAGGGTT TGCTTATGTA
GAATTTGTGG AGATTGATGC AGTTCAGAAT GCTCTCCTGT TAAATGAATC AGAATTGCAT GGTCGACAAC TAAAGGTCTC
AGCCAAGCGT ACAAACGTTC CTGGAATGAA GCAGTATTAT GGAAGAAGGC CTACTGGTTT CCGATCTAGG AGGCCTTTCA
TGCCTGCTCC ATTCTTTCCA CCGTATAGTT ATGGAAGGGT TCCAAGGTAT AGAAGACCCA CACGATACAG GCCATACTAG
TGCACATTCA CAGTTTGATA GGTGATCACA TTTATTTATG AGAGCAGGCG TTGTTAATTT GCCATTGTAA TAATTTTCGT
TGGTGAAGCA AGAACATAAA GCTTCCTTTT CACAGAAGTT TGATGCCCTC GCCAGTTAAC GCTGTAGAAT GTATGATGCG
GATAGTTTGA TCACTTTATT ACCCCTGTTG AATGTTAAAG CTGTAGAATT TGGCACTCAA GGGATGAAGG CAAATTTCTG
TAGTTTATTA GATTGAACAT CAAAATTAGA TTTAGTGATG TTGGATTTTT GGAAGACTTG ATGTTAACTG TGTTGGAATT
GGTTATAGCT AGCTTTAAGT ATGTGTGCTG TTGCGTGAAA TATCCTTATC ATGAAATTGA GTTATTAGAA AACGATATTG
TTTATGAACT TTCATACGTT GTGCCCTTCT AATGCGTTTG GTTATTGTCG TGATG

>Vigan.08G129200.01
ATGGAGCAGG AAGAGCATGA AGTATACGGT GCAGACATTC CCGACGAGGA GGTTGACATG GACGCCGACG CCGACCAACA
AGACGACCAA CTTCCCTCCA ATCACACAAC CAAGGAATTG GAGGATATGA GGAAGAGGCT GAAGGAGATC GAGGAAGAAG
CTAGCGCGCT TCGCGAAATG CAGGCCAAGG TTGAAAAAGA GATGGGAGCT GTTCAAGATT CGTCTGGTCC ATCTGCAACT
CAAGCTGAAA AGGAAGAAGT GGATGCTCGG TCAATCTATG TTGGTAATGT TGACTATGCA TGTACGCCTG AAGAAGTCCA
GCAGCATTTT CAGTCCTGTG GAACTGTGAA CAGGGTTACC ATACTGACAG ACAAATTTGG TCAACCAAAA GGGTTTGCTT
ATGTAGAATT TGTGGAGATT GATGCAGTTC AGAATGCTCT CCTGTTAAAT GAATCAGAAT TGCATGGTCG ACAACTAAAG
GTCTCAGCCA AGCGTACAAA CGTTCCTGGA ATGAAGCAGT ATTATGGAAG AAGGCCTACT GGTTTCCGAT CTAGGAGGCC
TTTCATGCCT GCTCCATTCT TTCCACCGTA TAGTTATGGA AGGGTTCCAA GGTATAGAAG ACCCACACGA TACAGGCCAT
ACTAG

>Vigan.08G129200.01
MEQEEHEVYG ADIPDEEVDM DADADQQDDQ LPSNHTTKEL EDMRKRLKEI EEEASALREM QAKVEKEMGA VQDSSGPSAT
QAEKEEVDAR SIYVGNVDYA CTPEEVQQHF QSCGTVNRVT ILTDKFGQPK GFAYVEFVEI DAVQNALLLN ESELHGRQLK
VSAKRTNVPG MKQYYGRRPT GFRSRRPFMP APFFPPYSYG RVPRYRRPTR YRPY*