GBrowse Details

Vigan.08G134300.01

Basic Information:
Name: Vigan.08G134300.01
Multiple alignment
Variant Information
Position: Chr08:11816028..11818963 (+ strand)
Length: 2936
Functional Information:
Description: Similar to Uncharacterized protein. [I1LCC7, Glycine max]
InterPro: Uncharacterised protein family UPF0497, trans-membrane plant (IPR006702)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.21,2.36,11.02,5.00,15.86,11.03,18.86,10.72
Arabidopsis thaliana homolog: AT3G23200.1
Automatic updates:
Name: BT096394 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-9D20 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:11816028..11816333 (+ strand)
Length: 306
Type: five_prime_UTR
Position: Chr08:11816334..11816464 (+ strand)
Length: 131
Type: CDS
Position: Chr08:11818148..11818280 (+ strand)
Length: 133
Type: CDS
Position: Chr08:11818367..11818561 (+ strand)
Length: 195
Type: CDS
Position: Chr08:11818562..11818963 (+ strand)
Length: 402
Type: three_prime_UTR


>Vigan.08G134300.01
AAGAGAAGAA AGAGAAATGC ATTTACAAGC AACCGAGGCT GTTCTGTTTG GTCACACGTT TGACTATTGC CATTTGCCAA
CCTTAACATC CTTGCTTTCC TTATCTAATC CAACTTCTTC GTTTTCCTGT CCTGTTTTGC CCGTGACAGG CAATCTTCTC
ACCCAGATTT CAATTTCCCT TCTTCCTTTC TGGGTCTTTT TCTGTTGCCC TTAAAATTCT TAACTTTCTT TTTTCTTAAT
TTTGGGTCAA ATATGAAGAT GGGTGTTCAT CCTTAGCCAT TGAGAATCCT AGATTTGGAG GGAAAGATGA GAGATTTCCC
TGGAACACCG GGCACTGTCC TTGGTTTGAC TCTAAGGATA TCACAGTTCG TATTTGCTGC TGGATCAATT GCTTCGATGG
CTACCACTTC CAGTTTCTTT AATTTTACGG CCTTTTGTTA CTTGATAGCT TCAATGGGTT TACAAGTCAT TTGGAGTTTT
GTGCTTTCTT TATTGGACGC ATATGCATTG GTGAATAAGA AGGTCCTTCA CAACGCAGTA CTGGTTAGCC TCTTTGTAGT
TGGAGATTGG GTAACTGCAA CACTATCACT AGCTGCAGCT TCTTCCTCAG CTGGCATCAC CGTTTTGTAC TTCAATGATC
TGGGACACTG CCATTTTGGA GAGGAATGCC AAAAGTACCA GATTTCAGTG GCCTTAGCCT TCTTCAGCTG GTTACCGATT
TCAATATCAT CCCTAATTAT GCTCTGGCTA TTAGCAGCAG GCTAGCACAC TCTATATCCC ACCAAGTTCT ATCATCCATC
ACATGTTCAT CTAATTGGAA ATTTTCTTTG GAAGTGTCAA TAGGAAAGGA AATAGAGTAC AGGGTTTCAC GCATTTAAAA
CGATTCCTTC ATTTCATCTC GAAATGTGCT AGCTGTAGAT TGTAAAGAGT AAAAGAGTAT ACGTGATTTT GCCTTGCAAA
GAAATTAAGT TACCAAAGTG TTATGCTGAT TTCCTGTTCT TGTAACTAGA ACAAAGTTAT ACATTTTATG TTTACAGGGA
ATTGGGTTGC TAGTGCATGT TTTTGCAAGA TGGTTTTCTC TTTTCTTATC TCACAAGTAT CTATTATTGG AGTACCTTTT
TATCCTGGAT TATTATGTCA CTGATAACTA AAGCTAGTAT TAAGAAG

>Vigan.08G134300.01
ATGAGAGATT TCCCTGGAAC ACCGGGCACT GTCCTTGGTT TGACTCTAAG GATATCACAG TTCGTATTTG CTGCTGGATC
AATTGCTTCG ATGGCTACCA CTTCCAGTTT CTTTAATTTT ACGGCCTTTT GTTACTTGAT AGCTTCAATG GGTTTACAAG
TCATTTGGAG TTTTGTGCTT TCTTTATTGG ACGCATATGC ATTGGTGAAT AAGAAGGTCC TTCACAACGC AGTACTGGTT
AGCCTCTTTG TAGTTGGAGA TTGGGTAACT GCAACACTAT CACTAGCTGC AGCTTCTTCC TCAGCTGGCA TCACCGTTTT
GTACTTCAAT GATCTGGGAC ACTGCCATTT TGGAGAGGAA TGCCAAAAGT ACCAGATTTC AGTGGCCTTA GCCTTCTTCA
GCTGGTTACC GATTTCAATA TCATCCCTAA TTATGCTCTG GCTATTAGCA GCAGGCTAG

>Vigan.08G134300.01
MRDFPGTPGT VLGLTLRISQ FVFAAGSIAS MATTSSFFNF TAFCYLIASM GLQVIWSFVL SLLDAYALVN KKVLHNAVLV
SLFVVGDWVT ATLSLAAASS SAGITVLYFN DLGHCHFGEE CQKYQISVAL AFFSWLPISI SSLIMLWLLA AG*