GBrowse Details

Vigan.08G137900.01

Basic Information:
Name: Vigan.08G137900.01
Multiple alignment
Variant Information
Position: Chr08:12165235..12168438 (+ strand)
Length: 3204
Functional Information:
Description: Similar to Sieve element occlusion by forisomes 4. [E2FKI0, Glycine max]
InterPro: Sieve element occlusion, N-terminal (IPR027942)
Sieve element occlusion, C-terminal (IPR027944)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.02,0.21,8.53,2.64,0.35,1.40,3.35,26.56
Automatic updates:
Name: KU508619 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris forisome protein (SEO) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001252745 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sieve element occlusion by forisomes 4 (SEO-F4), mRNA.
PubMed ID: 20932300 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:12165235..12165497 (+ strand)
Length: 263
Type: five_prime_UTR
Position: Chr08:12165498..12165701 (+ strand)
Length: 204
Type: CDS
Position: Chr08:12165923..12165991 (+ strand)
Length: 69
Type: CDS
Position: Chr08:12166085..12166494 (+ strand)
Length: 410
Type: CDS
Position: Chr08:12166597..12166685 (+ strand)
Length: 89
Type: CDS
Position: Chr08:12166788..12166930 (+ strand)
Length: 143
Type: CDS
Position: Chr08:12167056..12167538 (+ strand)
Length: 483
Type: CDS
Position: Chr08:12167618..12168217 (+ strand)
Length: 600
Type: CDS
Position: Chr08:12168218..12168438 (+ strand)
Length: 221
Type: three_prime_UTR


>Vigan.08G137900.01
CTCCACATTG CTGCAGCATG CTTCACGTTT AGAAACCACC GTATCAGAAG CTACTTTGCA TATTATTCTG TCTCTGTCTC
TTTTTCTGTC CCTTTTCTTT TCTTGAGTTG AGACATCTCT GTGCTTAAGG AAGTAACTGT GCCAAGTTTA AACTCACACG
CACTCCACCC TATATATAAG TTCGCAATCT CATCACCACC AAAGCCAGAG CAAAGCATAA TACAAACCGA CACAAGAGGA
TACTATTTCC ACGTTGAATC ACCATGGCAT TGTCTAATGG AACTTCAACT ACCGCTTTGA TTCCTCAAAG TGGTACAGCT
TCCATCCAAC ATCGTGCCTC TTTGCCCAAT CCATTTGATC TTACTGACGA TCAGATCCTA GACATTGTTT ATCTAGCCCA
CCTCAATGAC GATGAAATTT GCGACACAGA TAAACTTTAC AGCCTTGTCT CCAACATTGT CCTTCGGAGC CAATCTCTGA
TTTCCGCAAG CAGTTCCAAA CCAGAATTCG TTACACTGAA GCTGATTTCT TGCCAGATGA TATCCACACG TGCTGCTGCG
CACTGCGTAC ACCAGACAAC AATGTGGATA CTTCAACATC TGAAATGCTA CTCCTGGGAT GCGAAAGCGT TGATAGCAAT
AGCTGCTCTG TCTTTGGAGT ACGGGAGTTT CGTGCACCTT TCTCAGTTTC AAACAAACGA TGTGCTTGGA AACTCGTTGA
GGCAGCTGAA TCAAGTTCAG AGCAGGAATG TGTCTGCTGT TGCCGAACTT GTCACGTACA TAGTGACAGC GTTTCAGCAA
ATCAAAGAGT GGGCAAGGTA TGCTGCTGAT GGTTATGATC CAGAGGACGT GCCTGACTTG ACAGAAGCCT TTCAGGCCAT
CCTTGTTGTT GTATACTGGA CAATTGCTGC CGCTGTTGCT TCCACTGGCA ACCTTGTCGG TGTATCGAGC TATAAGTTAT
CAGAATACAA ATTCAGGCTT TCCGTTGCTG TTGAGAAATT GACAACGCAT CTTGGAAATT GCAGTGTGCA AATAGGCAAT
GTACGAGATT ACGTTATCAT CAGGAACATC TATGACAGGC CTAAAGATAT TGTAGACTTT TTGAAGGCTC TGATCTACCC
TCAAAAAAAG GGGTCCGAGA ATCCCAAGAT ATTTCAAGGG AGCAACCTAG TTACAAAGGG CATTGAAGTG TTCAGGCAGA
AACACGTGTT GCTCTTCATC TCGGGTCTGG ACAGCGTTGA AGATGAAATT TCGCTTTTGA ATTCAATGTA CGACAGACTG
CAAGAGGATC CAAAAGAAGC AAAAGGTTTT AAGAAAGAAG AATTTAAGAT TTTGTGGATC CCCATTGTGG AGGAGTGGAA
CGAGGGCAGT AGGGAACAGT TCAAAGCTTT GAAGAGTGGC ATCAAACTTT ACGTGGTGGA ATACTTGTAC GAGTTACCAG
GGTTGAAGAT AATAAAGGAC AGAGAAAGGT TGAATTTTGA TATTCAGCCA ATTGCCCCGT TGTTGAGCCC CAGAGGTACC
ATAATGAATG AAAACGCCCT GGAAGTGATA TTTGAATGGG GGATAGAAGC CTTCCCTTTC AGGAAAATTG ATGGTGAAGA
ACTCACTCTA AAATGGAAGT GGCTTTGGGA TTTAATCTTA AAAGCAACAC CGGGACTGCA GGTGAAGGAG AACAGATACA
TCTTTATCTA TGGAGGTAGC AACAGTGCAT GGATCCAAAA CTTCACACAC GAACTATCTA GGATAAAAAT GAACGAGAGT
ATCCAGCGTG CGGATATCAT AATAGAGTAC TATCAACTGG GGAAGGGGAA GAGTGAACCG AACAACAGTG TTCCGAGTTT
CTGGATTGGC GTGGAAAGGA AGAAGCAGAA CAAGAAACAC CAAGAGGCCG TGGACTGCGA GATTCAAAAA ATTGTGAAGT
GCTTATTCTG CCTGAAACGA GACCCACAGG GATGGGCCAT TCTGAGCAAA GGGCATAACA TTAAGCACCT TTGCCATGGG
CAGGCTGTAT ACCAGACCGT GGCGGAGTTT CAAAACTGGA AAGGTAAAGT GTTTGAGAGA GAAGGATTTG ACATTGCCTT
CAAGGAGTAC TACGACGCCA AGGAAAAAGA GATATCTGCC ATTCAACCAT GCGAGGACTA CACTTCAACT TCAAGTGTCA
TAGCTACCAT CACATGCCCC AACCCCACCT GTGGCCGAGT CATGGAGGTC TCTTCTGTTA ACTACAAGTG CTGCCATCGT
GATGATGCTT TGAATTGTTA ACTACAACTG CCTCAGTTTC GTTTTTCTTC TTTCTTCAAC TTCCAAGTTC TGCTCCCATT
TTTCTTTGCT TACTATGCAT CGTGTGATAT ACTATACTAT ACGCCGACCT GGTTTACCCC TTCAATGGGT AGACAAAGCT
AGAATAAGAC TCTCTTTTCT CTGTCTCTCT GTAGTCGAAT TTCTTTTTTC AATAAAGTTA TAAATTACGC TTTTTTTTTA
AT

>Vigan.08G137900.01
ATGGCATTGT CTAATGGAAC TTCAACTACC GCTTTGATTC CTCAAAGTGG TACAGCTTCC ATCCAACATC GTGCCTCTTT
GCCCAATCCA TTTGATCTTA CTGACGATCA GATCCTAGAC ATTGTTTATC TAGCCCACCT CAATGACGAT GAAATTTGCG
ACACAGATAA ACTTTACAGC CTTGTCTCCA ACATTGTCCT TCGGAGCCAA TCTCTGATTT CCGCAAGCAG TTCCAAACCA
GAATTCGTTA CACTGAAGCT GATTTCTTGC CAGATGATAT CCACACGTGC TGCTGCGCAC TGCGTACACC AGACAACAAT
GTGGATACTT CAACATCTGA AATGCTACTC CTGGGATGCG AAAGCGTTGA TAGCAATAGC TGCTCTGTCT TTGGAGTACG
GGAGTTTCGT GCACCTTTCT CAGTTTCAAA CAAACGATGT GCTTGGAAAC TCGTTGAGGC AGCTGAATCA AGTTCAGAGC
AGGAATGTGT CTGCTGTTGC CGAACTTGTC ACGTACATAG TGACAGCGTT TCAGCAAATC AAAGAGTGGG CAAGGTATGC
TGCTGATGGT TATGATCCAG AGGACGTGCC TGACTTGACA GAAGCCTTTC AGGCCATCCT TGTTGTTGTA TACTGGACAA
TTGCTGCCGC TGTTGCTTCC ACTGGCAACC TTGTCGGTGT ATCGAGCTAT AAGTTATCAG AATACAAATT CAGGCTTTCC
GTTGCTGTTG AGAAATTGAC AACGCATCTT GGAAATTGCA GTGTGCAAAT AGGCAATGTA CGAGATTACG TTATCATCAG
GAACATCTAT GACAGGCCTA AAGATATTGT AGACTTTTTG AAGGCTCTGA TCTACCCTCA AAAAAAGGGG TCCGAGAATC
CCAAGATATT TCAAGGGAGC AACCTAGTTA CAAAGGGCAT TGAAGTGTTC AGGCAGAAAC ACGTGTTGCT CTTCATCTCG
GGTCTGGACA GCGTTGAAGA TGAAATTTCG CTTTTGAATT CAATGTACGA CAGACTGCAA GAGGATCCAA AAGAAGCAAA
AGGTTTTAAG AAAGAAGAAT TTAAGATTTT GTGGATCCCC ATTGTGGAGG AGTGGAACGA GGGCAGTAGG GAACAGTTCA
AAGCTTTGAA GAGTGGCATC AAACTTTACG TGGTGGAATA CTTGTACGAG TTACCAGGGT TGAAGATAAT AAAGGACAGA
GAAAGGTTGA ATTTTGATAT TCAGCCAATT GCCCCGTTGT TGAGCCCCAG AGGTACCATA ATGAATGAAA ACGCCCTGGA
AGTGATATTT GAATGGGGGA TAGAAGCCTT CCCTTTCAGG AAAATTGATG GTGAAGAACT CACTCTAAAA TGGAAGTGGC
TTTGGGATTT AATCTTAAAA GCAACACCGG GACTGCAGGT GAAGGAGAAC AGATACATCT TTATCTATGG AGGTAGCAAC
AGTGCATGGA TCCAAAACTT CACACACGAA CTATCTAGGA TAAAAATGAA CGAGAGTATC CAGCGTGCGG ATATCATAAT
AGAGTACTAT CAACTGGGGA AGGGGAAGAG TGAACCGAAC AACAGTGTTC CGAGTTTCTG GATTGGCGTG GAAAGGAAGA
AGCAGAACAA GAAACACCAA GAGGCCGTGG ACTGCGAGAT TCAAAAAATT GTGAAGTGCT TATTCTGCCT GAAACGAGAC
CCACAGGGAT GGGCCATTCT GAGCAAAGGG CATAACATTA AGCACCTTTG CCATGGGCAG GCTGTATACC AGACCGTGGC
GGAGTTTCAA AACTGGAAAG GTAAAGTGTT TGAGAGAGAA GGATTTGACA TTGCCTTCAA GGAGTACTAC GACGCCAAGG
AAAAAGAGAT ATCTGCCATT CAACCATGCG AGGACTACAC TTCAACTTCA AGTGTCATAG CTACCATCAC ATGCCCCAAC
CCCACCTGTG GCCGAGTCAT GGAGGTCTCT TCTGTTAACT ACAAGTGCTG CCATCGTGAT GATGCTTTGA ATTGTTAA

>Vigan.08G137900.01
MALSNGTSTT ALIPQSGTAS IQHRASLPNP FDLTDDQILD IVYLAHLNDD EICDTDKLYS LVSNIVLRSQ SLISASSSKP
EFVTLKLISC QMISTRAAAH CVHQTTMWIL QHLKCYSWDA KALIAIAALS LEYGSFVHLS QFQTNDVLGN SLRQLNQVQS
RNVSAVAELV TYIVTAFQQI KEWARYAADG YDPEDVPDLT EAFQAILVVV YWTIAAAVAS TGNLVGVSSY KLSEYKFRLS
VAVEKLTTHL GNCSVQIGNV RDYVIIRNIY DRPKDIVDFL KALIYPQKKG SENPKIFQGS NLVTKGIEVF RQKHVLLFIS
GLDSVEDEIS LLNSMYDRLQ EDPKEAKGFK KEEFKILWIP IVEEWNEGSR EQFKALKSGI KLYVVEYLYE LPGLKIIKDR
ERLNFDIQPI APLLSPRGTI MNENALEVIF EWGIEAFPFR KIDGEELTLK WKWLWDLILK ATPGLQVKEN RYIFIYGGSN
SAWIQNFTHE LSRIKMNESI QRADIIIEYY QLGKGKSEPN NSVPSFWIGV ERKKQNKKHQ EAVDCEIQKI VKCLFCLKRD
PQGWAILSKG HNIKHLCHGQ AVYQTVAEFQ NWKGKVFERE GFDIAFKEYY DAKEKEISAI QPCEDYTSTS SVIATITCPN
PTCGRVMEVS SVNYKCCHRD DALNC*