GBrowse Details

Vigan.08G138200.01

Basic Information:
Name: Vigan.08G138200.01
Multiple alignment
Variant Information
Position: Chr08:12185724..12189125 (+ strand)
Length: 3402
Functional Information:
Description: Similar to Sieve element-occluding protein. [A8C978, Medicago truncatula]
InterPro: Sieve element occlusion, N-terminal (IPR027942)
Sieve element occlusion, C-terminal (IPR027944)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.30,0.56,6.07,2.85,0.32,4.07,2.67,44.33
Automatic updates:
Name: NM_001254497 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sieve element occlusion by forisomes 1 (SEO-F1), mRNA.
PubMed ID: 20932300 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:12185724..12185823 (+ strand)
Length: 100
Type: five_prime_UTR
Position: Chr08:12185824..12186117 (+ strand)
Length: 294
Type: CDS
Position: Chr08:12186319..12186396 (+ strand)
Length: 78
Type: CDS
Position: Chr08:12186579..12186988 (+ strand)
Length: 410
Type: CDS
Position: Chr08:12187122..12187210 (+ strand)
Length: 89
Type: CDS
Position: Chr08:12187312..12187445 (+ strand)
Length: 134
Type: CDS
Position: Chr08:12187665..12188147 (+ strand)
Length: 483
Type: CDS
Position: Chr08:12188267..12188860 (+ strand)
Length: 594
Type: CDS
Position: Chr08:12188861..12189125 (+ strand)
Length: 265
Type: three_prime_UTR


>Vigan.08G138200.01
CCCCAGCAGA AGCTACTTCG TATATTGTCT TTTTTCGAAA CTCTTCATTT ACCAATAAAG TAATTATACC AAATCTACAC
TCTTGTGCCC TCTTCAGCTT ATGTGTGTAT ATATATATAT ATACGTGGAT GAACCAACCA AACCCCACAA GGCATCCTTT
GCTTTCAGAT TTTACAAGTT CAAGAATACT TGCTTTGCTC CCAAAACCTG GTTCACCATG TCACTGTCCA ATGGAGCTGA
TGCTATTTCC AAGCAGCAAA AACCCCAGCT GCCGAACCCC TTTGATCTCA CCGACTCTGA GATCCTTGAG AAAGTTTATG
TCACCCACCT CCATGATGAT GACAAGTGCG ATGTAGATGT CCTTTTCGAT GTTGTGTCCA GTGTTGTACT TAAGACAAGG
TTAACTGAAA GCAAAGCTTA TCAGACCGTT TTCCAACCAG AGTTTCGTAC AATGAAGCTG ATTTCCTGTC AGATGATAAC
CACACCCCGT GGTGAACGTT ACGTGCACCA AGCGACAATG TGCATTCTTC ATCACCTCAG AAACTACTCG TGGGATGCCA
AGGCACTAGT GACTCTAGCT GCTTTCGCTT TGGAGTATGG GAATCTTCTG CACCTCAGTG ATGCTGCAAC ACCAGATAAC
CTACTTACAA ACTCCTTGAA ACAACTGAAT CAAATTCAAA CCCGAAAGGA CCCTGCCACC ATTTTGGTGG CATTGGTGAC
GAAGGTGCTT CACGACATCC AAGAGTGGAC AAGATTGTCT TCTTTTGGTT ATGACATACT GGATGTGCCA TCTTTGTCTG
ATGCCCTTCA TGAGGTTCCT GTTGTTGTAT ATTGGATAAT TTCTTCCCTT ATTGCTGCCA CCGGAAACCT CGTTGGTGTG
TCGGACTATG TATTATCACA TTTTGTGGGA AGGCTTTCTT CTGCTGCTTC TAGATTCCAG GACCATCTTA AATTGAGCCG
AGAGCAAAAA GGTTATGCAG ATGAATACTA CAAGCGAAAA AAGGCATTTT CTAATCCCAA AGATATTGTA GAACTCTTAA
GGCTTCTGAT CCAACATAAT GGATCTAAGG TCCAAATATA TGATGGCAGC ATCAAAACCA CCACGGATAT TGAAGTCTTC
GACCAGAAAT ATGTCTTGTT GTTCATTTCA AGCCTCGACA AGATTGAAGA TGAGATTTCA CTTTTGAATT CACTCTACGA
CAGACTGCAG GAAAATCCAA GTGAAATAAT AAAAAACTAC AAGAAAGAGG ATTTCAAGAT TTTATGGATT CCCATTGTGA
CTTTCTGGGA CGACAAGCAA AGACTCAAAT TCAATGCGTT GAAGGATACC ATCAAATGGT ACGCAGTGGA GTTCTTCACT
GAGCTACCAG GCACTGACCT AATAAAAGAG AAATTTAATT ACAGGGGTAA ACCTATTATC CCAGTGCTCA CCCCTCTCGC
TGACACGTTG AATGAAGATG CTATGGACTT GATTTTCCAA TGGGGAATCG ACGCGTTCCC CTTTAGGAAA TCTGATGGTA
TTGACCTCAC TCTAAAATGG AAGTGGTTCT GGGATGCAAC AAAGAAAGCA AATCTTGGAA TACAGCAGGT CACCGGAGAC
AGGTATATTT TCATCTATGG AGGTTCTGAC AAAAAGTGGA TCCAAGACTT CGCAGTGGCA GTGGAGAAAA CAAAAGGGCA
TGCAGCTATC TTGAACACAG ATACTATAAT AGATCACTAT GAGTTGGGGA AGGATGACCC CAGGGTTGTT CCTCGTTTCT
GGATCGAAAT AGAAAGGAAG AGACTGAAGA AGCATAAGGA TGTGGTGGAC TGTGAGATTC AAAAAATTGT GAGGACCTTG
CTTTGCCTTA AACAAGACCA ACAAGGATGG GCTATTCTCA CCAAAGGCTC TAACGTGAGG GTTCTGGGTC ACGGTGAGCC
TATGCGTCAA ACTCTGGTTG AGTTTGATGC ATGGAAAGAC AAAGTGTTTC AAAAAGAAGG CTTTGACGTG GCCTTCGATG
AATACTATAA GATTAAGCTT AACGAGGTAT ACGATCGTCA ACAATGTGCT GTTGTTAAAA ATAATGCAGA TGTTCTAGTG
ACTATAACAT GCCCAAATCC CACATGTGGA CGTGTGATGG ACGTGACTTC TGTTAATTAC AAGTGTTGCC ATCGTGATGC
TCCAAACAGT GGCAACATCT GAATGTGAAG GGGAGGGGAA AGAGGTTAAT TCTTAGCATC CACGATTTGG AAAACCTTTG
TATTTGGATT TCTTTTTGCT GTGTCGAGTT ACTGTCTATG CATGTCTTTT GTGTCAAGAT GAAAGCTATA TAGCCACTTG
ATTTGCCCAT GATGAATGGG AAAATGAATA ATGGCTTTGC TTCATCTTTA TCTCCATTGT CAACTATAAA ATTGAATAAA
CTTAGCTCTG CATGTTCATA AATTGAGCCC TTCTCTTCCT TCACTTT

>Vigan.08G138200.01
ATGTGTGTAT ATATATATAT ATACGTGGAT GAACCAACCA AACCCCACAA GGCATCCTTT GCTTTCAGAT TTTACAAGTT
CAAGAATACT TGCTTTGCTC CCAAAACCTG GTTCACCATG TCACTGTCCA ATGGAGCTGA TGCTATTTCC AAGCAGCAAA
AACCCCAGCT GCCGAACCCC TTTGATCTCA CCGACTCTGA GATCCTTGAG AAAGTTTATG TCACCCACCT CCATGATGAT
GACAAGTGCG ATGTAGATGT CCTTTTCGAT GTTGTGTCCA GTGTTGTACT TAAGACAAGG TTAACTGAAA GCAAAGCTTA
TCAGACCGTT TTCCAACCAG AGTTTCGTAC AATGAAGCTG ATTTCCTGTC AGATGATAAC CACACCCCGT GGTGAACGTT
ACGTGCACCA AGCGACAATG TGCATTCTTC ATCACCTCAG AAACTACTCG TGGGATGCCA AGGCACTAGT GACTCTAGCT
GCTTTCGCTT TGGAGTATGG GAATCTTCTG CACCTCAGTG ATGCTGCAAC ACCAGATAAC CTACTTACAA ACTCCTTGAA
ACAACTGAAT CAAATTCAAA CCCGAAAGGA CCCTGCCACC ATTTTGGTGG CATTGGTGAC GAAGGTGCTT CACGACATCC
AAGAGTGGAC AAGATTGTCT TCTTTTGGTT ATGACATACT GGATGTGCCA TCTTTGTCTG ATGCCCTTCA TGAGGTTCCT
GTTGTTGTAT ATTGGATAAT TTCTTCCCTT ATTGCTGCCA CCGGAAACCT CGTTGGTGTG TCGGACTATG TATTATCACA
TTTTGTGGGA AGGCTTTCTT CTGCTGCTTC TAGATTCCAG GACCATCTTA AATTGAGCCG AGAGCAAAAA GGTTATGCAG
ATGAATACTA CAAGCGAAAA AAGGCATTTT CTAATCCCAA AGATATTGTA GAACTCTTAA GGCTTCTGAT CCAACATAAT
GGATCTAAGG TCCAAATATA TGATGGCAGC ATCAAAACCA CCACGGATAT TGAAGTCTTC GACCAGAAAT ATGTCTTGTT
GTTCATTTCA AGCCTCGACA AGATTGAAGA TGAGATTTCA CTTTTGAATT CACTCTACGA CAGACTGCAG GAAAATCCAA
GTGAAATAAT AAAAAACTAC AAGAAAGAGG ATTTCAAGAT TTTATGGATT CCCATTGTGA CTTTCTGGGA CGACAAGCAA
AGACTCAAAT TCAATGCGTT GAAGGATACC ATCAAATGGT ACGCAGTGGA GTTCTTCACT GAGCTACCAG GCACTGACCT
AATAAAAGAG AAATTTAATT ACAGGGGTAA ACCTATTATC CCAGTGCTCA CCCCTCTCGC TGACACGTTG AATGAAGATG
CTATGGACTT GATTTTCCAA TGGGGAATCG ACGCGTTCCC CTTTAGGAAA TCTGATGGTA TTGACCTCAC TCTAAAATGG
AAGTGGTTCT GGGATGCAAC AAAGAAAGCA AATCTTGGAA TACAGCAGGT CACCGGAGAC AGGTATATTT TCATCTATGG
AGGTTCTGAC AAAAAGTGGA TCCAAGACTT CGCAGTGGCA GTGGAGAAAA CAAAAGGGCA TGCAGCTATC TTGAACACAG
ATACTATAAT AGATCACTAT GAGTTGGGGA AGGATGACCC CAGGGTTGTT CCTCGTTTCT GGATCGAAAT AGAAAGGAAG
AGACTGAAGA AGCATAAGGA TGTGGTGGAC TGTGAGATTC AAAAAATTGT GAGGACCTTG CTTTGCCTTA AACAAGACCA
ACAAGGATGG GCTATTCTCA CCAAAGGCTC TAACGTGAGG GTTCTGGGTC ACGGTGAGCC TATGCGTCAA ACTCTGGTTG
AGTTTGATGC ATGGAAAGAC AAAGTGTTTC AAAAAGAAGG CTTTGACGTG GCCTTCGATG AATACTATAA GATTAAGCTT
AACGAGGTAT ACGATCGTCA ACAATGTGCT GTTGTTAAAA ATAATGCAGA TGTTCTAGTG ACTATAACAT GCCCAAATCC
CACATGTGGA CGTGTGATGG ACGTGACTTC TGTTAATTAC AAGTGTTGCC ATCGTGATGC TCCAAACAGT GGCAACATCT
GA

>Vigan.08G138200.01
MCVYIYIYVD EPTKPHKASF AFRFYKFKNT CFAPKTWFTM SLSNGADAIS KQQKPQLPNP FDLTDSEILE KVYVTHLHDD
DKCDVDVLFD VVSSVVLKTR LTESKAYQTV FQPEFRTMKL ISCQMITTPR GERYVHQATM CILHHLRNYS WDAKALVTLA
AFALEYGNLL HLSDAATPDN LLTNSLKQLN QIQTRKDPAT ILVALVTKVL HDIQEWTRLS SFGYDILDVP SLSDALHEVP
VVVYWIISSL IAATGNLVGV SDYVLSHFVG RLSSAASRFQ DHLKLSREQK GYADEYYKRK KAFSNPKDIV ELLRLLIQHN
GSKVQIYDGS IKTTTDIEVF DQKYVLLFIS SLDKIEDEIS LLNSLYDRLQ ENPSEIIKNY KKEDFKILWI PIVTFWDDKQ
RLKFNALKDT IKWYAVEFFT ELPGTDLIKE KFNYRGKPII PVLTPLADTL NEDAMDLIFQ WGIDAFPFRK SDGIDLTLKW
KWFWDATKKA NLGIQQVTGD RYIFIYGGSD KKWIQDFAVA VEKTKGHAAI LNTDTIIDHY ELGKDDPRVV PRFWIEIERK
RLKKHKDVVD CEIQKIVRTL LCLKQDQQGW AILTKGSNVR VLGHGEPMRQ TLVEFDAWKD KVFQKEGFDV AFDEYYKIKL
NEVYDRQQCA VVKNNADVLV TITCPNPTCG RVMDVTSVNY KCCHRDAPNS GNI*