GBrowse Details

Vigan.08G138900.01

Basic Information:
Name: Vigan.08G138900.01
Multiple alignment
Variant Information
Position: Chr08:12263236..12268870 (- strand)
Length: 5635
Functional Information:
Description: Similar to ureidoglycolate hydrolase-like. [XP_003556365.1, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: hydrolase activity (GO:0016787)
Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines (GO:0016813)
InterPro: Peptidase M20 (IPR002933)
Amidase, hydantoinase/carbamoylase (IPR010158)
Peptidase M20, dimerisation domain (IPR011650)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.96,20.51,30.37,25.05,47.10,33.36,43.10,28.29
Arabidopsis thaliana homolog: AT5G43600.1
Automatic updates:
Name: NM_001255514 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative ureidoglycolate amidohydrolase (LOC100797579), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:12263236..12264159 (- strand)
Length: 924
Type: three_prime_UTR
Position: Chr08:12264160..12264272 (- strand)
Length: 113
Type: CDS
Position: Chr08:12264787..12264827 (- strand)
Length: 41
Type: CDS
Position: Chr08:12265614..12265854 (- strand)
Length: 241
Type: CDS
Position: Chr08:12266062..12266124 (- strand)
Length: 63
Type: CDS
Position: Chr08:12266195..12266286 (- strand)
Length: 92
Type: CDS
Position: Chr08:12266568..12266670 (- strand)
Length: 103
Type: CDS
Position: Chr08:12266748..12266950 (- strand)
Length: 203
Type: CDS
Position: Chr08:12267106..12267192 (- strand)
Length: 87
Type: CDS
Position: Chr08:12267788..12267916 (- strand)
Length: 129
Type: CDS
Position: Chr08:12268021..12268095 (- strand)
Length: 75
Type: CDS
Position: Chr08:12268348..12268433 (- strand)
Length: 86
Type: CDS
Position: Chr08:12268527..12268709 (- strand)
Length: 183
Type: CDS
Position: Chr08:12268710..12268870 (- strand)
Length: 161
Type: five_prime_UTR


>Vigan.08G138900.01
ATGGGATATT AGGTTTGTGG GGCTTATGTC ATTCACTTTC ACGAATCAAG AGTGCTATCT GCACGTGAAT AGACAGAACA
CGTGCAGAGG AATCCTTTAT TACCGCCGAT GAGGTAGGTG TGGCTGCTGA TAGCAACGCC AATCAATTAA TACCTCAAAA
AATGGTTCAC TCTGTGCTCC TATTTCTAGT TCTCACTCTA ACTGCTGTCT CTGCTCAGCA ACATCAGTAT GATGACCCTT
CTATCACAGC CACCATGGAG AAATTTTCTG GCTACGCAAT CAACGAACCT CACTCTTTCC AACTCACTTC ACTCTCCGTT
GATGCTCAAG CTCTGCAGAA CCAGATTGAC GAGCTTGCAG CTTTTTCTGA CTCACCTGCT CCATCAGTGA CCAGAGTCTT
GTTCACTGAC AAGGATGTTT TGGGTCGCAA CTATGTAAAA ACCCAGATGG AACTTGCTGG TCTATCTGTG AGAGAGGATG
CTGTTGGTAA CATATTTGGT CGTTGGGAGG GCCTCGAGCC TGAGCTTGCT GCAGTTGCAA CAGGTTCGCA CGTTGATGCC
ATACCATACT CTGGAAAGTA TGATGGAGTT GTTGGTGTTT TAGGCGCTAT TGAAGCCATC AGAGTCCTAA AAAGGTCTGG
TTTTAAACCT AGAAGATCAT TGGAAGTCAT ATCATTCACA TCAGAAGAAC CAACACGCTT TGGGATAGGT TGCTTGGGAA
GCCGCTTATT GGCCGGGAGT GAGGATCTTG CAAATGCTCT AAAGACAACA ACTGATATTC AAAACATATC CTTCCTAGAT
GCTGCAAGAT CTGCTGGGTA TGGGAAAAAT GGAGACGACT TATCCAGTGT ATTTTTAAAG AAAGGAACAT ATTCTGCTTT
TATAGAACTG CACATAGAGC AAGGACCTAT TCTGGAAGAT GAAGGTATAT CTATAGGCAT AGTTACTGCC ATTGCAGCTC
CAGCAAGTCT AAAGGTTGAA TTTGAAGGAA ATGGGGGCCA TGCAGGCGCG GTCCTCATGC CTAACAGAAA TGATGCTGGT
CTTGCTGCTT CTGAACTAGC CCTGGCTGTG GAGAGGCATG TGCTGGAGTC TGGGTCAATT GATACCGTTG GCACTGTTGG
TATCCTGGAA CTGCATCCTG GAGCAATCAA CAGCATCCCT AGCAAATCTC ACCTCGAAAT TGACACAAGA GACATTGATG
AGGAAAGAAG AAACAAAGTG GTGGAGAAAA TTCATCAATC AGCAATTAAA ATAACCAAAA CCCGTGGTGT CAAGCTCTCT
GACTTTCGTG TCATTAATCA GGATCCACCG GCTCTTTCTG ATGAAGCTGT CACAAAGGCA GTTGAAATTG CAACAAAAGA
ACTAAACTTG ACAAGCAAAT TGATGATCAG TAGAGCCTAT CATGATTCAT TGTTTATGGC CAGGCTGTCT CCGATGGGCA
TGATTTTCAT TCCTTGTTAC AAAGGGTACA GCCATAAGCC TGAAGAGTTT GCCAGCATTC AAGATATGTC TAATGGTGTA
AAAGTATTGG CGCTCACCCT AGCTAAATTG TCCAGTCAGT TACATATTCT GAAGTGAGTT CATGTGGACT ATCATTGTTG
AAAAAACGTA ATTTATTTCT GTTAGACTGT TGACTGTTAT AGCTTACTGA TTAAATAATT TAAAACTTAA TCCCCCCTTT
TTTCTATCAA GATGAGGGGT TGAACTATTC AATATGACAA GAAGATTTAT TAGAAACACT TTTTAATGTT GTAAAATGAT
AATTGCCTGC CTGTGGAGAA GGACTCACAA GAGTGAATTT TACTTCACCA AACTGCTTAA AAGACAAAGA AACTACTGGT
ATTGTAGAAC CCAGTTGCAT ACACCCCAAC CAGAATAGCC TTTTTAAATC TTAAATAGTT GGACCACTTT GTATGGAGAC
AAAAGACATC TTACTTTTCT CTATTGTCCA TATTACATTT TAAAATCCCA TCTGATTATA ATGGTCAAAA CAGCTGGATT
CAATAAATAA AAGTGATTAG AATATAAGTG GGAAAAATAC ATATTTTTAG TTTGGTGGTT GGAATAGCCC TTCATGGATC
CTTTGAGTGA GAAAATGATA TTGTGGGTTG TAAGATCTTC CTCAAGAAGA AGGAAGTTAG TAAAGTAAGG ATGAATTTTA
GTTGTGATGC TCCAGGTGGG TAGTTTCGCC CATGCCTATG TTTATTGCTT AAACTACGGA GAGATTCAAA AGAACAAACC
GCTCATTCTT CACTCTCAAA TTATGACTCA AACTCAACCT TGACGTGGGA AGGTTTGTAC CTACTATTTT GTACTTCAAT
TGACTTAGAT TGTGATTTAT TTGACCTCTA AACCATTGTT TTTTAATGTA GCCTTTATAT TCTTAACTTT CTACTGTTAA
ACTAATAATG ACTTTTCAAC AGACAAAACA GGGTAAAGCA ATTTTTGTAG AAAATAATCG TGACACACAT TATAACAGGA
CTTTTCAATT CATTGTGTTA A

>Vigan.08G138900.01
ATGGTTCACT CTGTGCTCCT ATTTCTAGTT CTCACTCTAA CTGCTGTCTC TGCTCAGCAA CATCAGTATG ATGACCCTTC
TATCACAGCC ACCATGGAGA AATTTTCTGG CTACGCAATC AACGAACCTC ACTCTTTCCA ACTCACTTCA CTCTCCGTTG
ATGCTCAAGC TCTGCAGAAC CAGATTGACG AGCTTGCAGC TTTTTCTGAC TCACCTGCTC CATCAGTGAC CAGAGTCTTG
TTCACTGACA AGGATGTTTT GGGTCGCAAC TATGTAAAAA CCCAGATGGA ACTTGCTGGT CTATCTGTGA GAGAGGATGC
TGTTGGTAAC ATATTTGGTC GTTGGGAGGG CCTCGAGCCT GAGCTTGCTG CAGTTGCAAC AGGTTCGCAC GTTGATGCCA
TACCATACTC TGGAAAGTAT GATGGAGTTG TTGGTGTTTT AGGCGCTATT GAAGCCATCA GAGTCCTAAA AAGGTCTGGT
TTTAAACCTA GAAGATCATT GGAAGTCATA TCATTCACAT CAGAAGAACC AACACGCTTT GGGATAGGTT GCTTGGGAAG
CCGCTTATTG GCCGGGAGTG AGGATCTTGC AAATGCTCTA AAGACAACAA CTGATATTCA AAACATATCC TTCCTAGATG
CTGCAAGATC TGCTGGGTAT GGGAAAAATG GAGACGACTT ATCCAGTGTA TTTTTAAAGA AAGGAACATA TTCTGCTTTT
ATAGAACTGC ACATAGAGCA AGGACCTATT CTGGAAGATG AAGGTATATC TATAGGCATA GTTACTGCCA TTGCAGCTCC
AGCAAGTCTA AAGGTTGAAT TTGAAGGAAA TGGGGGCCAT GCAGGCGCGG TCCTCATGCC TAACAGAAAT GATGCTGGTC
TTGCTGCTTC TGAACTAGCC CTGGCTGTGG AGAGGCATGT GCTGGAGTCT GGGTCAATTG ATACCGTTGG CACTGTTGGT
ATCCTGGAAC TGCATCCTGG AGCAATCAAC AGCATCCCTA GCAAATCTCA CCTCGAAATT GACACAAGAG ACATTGATGA
GGAAAGAAGA AACAAAGTGG TGGAGAAAAT TCATCAATCA GCAATTAAAA TAACCAAAAC CCGTGGTGTC AAGCTCTCTG
ACTTTCGTGT CATTAATCAG GATCCACCGG CTCTTTCTGA TGAAGCTGTC ACAAAGGCAG TTGAAATTGC AACAAAAGAA
CTAAACTTGA CAAGCAAATT GATGATCAGT AGAGCCTATC ATGATTCATT GTTTATGGCC AGGCTGTCTC CGATGGGCAT
GATTTTCATT CCTTGTTACA AAGGGTACAG CCATAAGCCT GAAGAGTTTG CCAGCATTCA AGATATGTCT AATGGTGTAA
AAGTATTGGC GCTCACCCTA GCTAAATTGT CCAGTCAGTT ACATATTCTG AAGTGA

>Vigan.08G138900.01
MVHSVLLFLV LTLTAVSAQQ HQYDDPSITA TMEKFSGYAI NEPHSFQLTS LSVDAQALQN QIDELAAFSD SPAPSVTRVL
FTDKDVLGRN YVKTQMELAG LSVREDAVGN IFGRWEGLEP ELAAVATGSH VDAIPYSGKY DGVVGVLGAI EAIRVLKRSG
FKPRRSLEVI SFTSEEPTRF GIGCLGSRLL AGSEDLANAL KTTTDIQNIS FLDAARSAGY GKNGDDLSSV FLKKGTYSAF
IELHIEQGPI LEDEGISIGI VTAIAAPASL KVEFEGNGGH AGAVLMPNRN DAGLAASELA LAVERHVLES GSIDTVGTVG
ILELHPGAIN SIPSKSHLEI DTRDIDEERR NKVVEKIHQS AIKITKTRGV KLSDFRVINQ DPPALSDEAV TKAVEIATKE
LNLTSKLMIS RAYHDSLFMA RLSPMGMIFI PCYKGYSHKP EEFASIQDMS NGVKVLALTL AKLSSQLHIL K*