GBrowse Details

Vigan.08G139600.01

Basic Information:
Name: Vigan.08G139600.01
Multiple alignment
Variant Information
Position: Chr08:12325569..12332513 (- strand)
Length: 6945
Functional Information:
Description: Similar to Uncharacterized protein. [I1LC89, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Proton-dependent oligopeptide transporter family (IPR000109)
Major facilitator superfamily domain, general substrate transporter (IPR016196)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.76,1.20,52.42,181.58,14.38,30.19,65.75,138.90
Arabidopsis thaliana homolog: AT2G02040.1, AT2G40460.1, AT3G54140.1, AT5G46040.1, AT5G46050.1
Automatic updates:
Name: NM_001250025 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max NRT1-3 protein (NRT1-3), mRNA.
PubMed ID: 11267662 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:12325569..12325903 (- strand)
Length: 335
Type: three_prime_UTR
Position: Chr08:12325904..12326780 (- strand)
Length: 877
Type: CDS
Position: Chr08:12326953..12327518 (- strand)
Length: 566
Type: CDS
Position: Chr08:12329623..12329840 (- strand)
Length: 218
Type: CDS
Position: Chr08:12332179..12332302 (- strand)
Length: 124
Type: CDS
Position: Chr08:12332303..12332513 (- strand)
Length: 211
Type: five_prime_UTR


>Vigan.08G139600.01
ATAGTGAGGA TACTGGGCCC ATGTGGAGTA GAAGTGTATC CACAGAGCAC AGAGCACAGA GCACAGAGCA TGAGGTCTAT
AAATAGTGTA TAGTTTTTAT GAACGAAGAC CATGCCACCA CACTTTCACT TCTCTCATTT CTCCTTCCCA TCCTCAAAAC
CTTTCTGAGT TTGGAATCTA AGTTCTACTT GTGTTACTGA GTTAAGCAAA GATGACCATG GAAGAGGGGA CGGTGGTGAA
CCAGGACTAC ACACAAGATG GAACTGTCAA CATTAAAGGC AAACCTATTC TTAGATCCAA CAGTGGTGGT TGGAAAGCTT
GTTCCTTTGT AGTCGTGTAT GAGGTATTCG AAAGGATGGC GTACTATGGA ATATCATCAA ATTTGGTCGT GTATCTTACA
AAAAAGCTTC ATCAAGGGAC AGTATCATCT TCAAACAATG TCACCAACTG GGTTGGCACC ATTTGGATGA CACCAATTTT
AGGTGCCTAT GTTGCTGACG CTTTCCTCGG CCGCTATTGG ACTTTTACCA TAGCCTCTAC CATTTATCTC TCGGGTATGT
CTCTGCTTAC ACTGGCAGTG TCCCTTCCGA GCCTAAAGCC ACCTGCATGC TTCGAAAAGG ATGTGACAAA ATGCGCGAAA
GCCTCCACAC TACAGCTAGC AGTGTTCTAT GGTGCACTTT ACACTCTAGC AGTGGGAACT GGAGGAACCA AGCCCAACAT
CTCCACCATA GGAGCTGATC AGTTTGATGA TTTTCACCCT AAAGAGAAGT TGCATAAGCT CTCTTTCTTC AATTGGTGGA
TGTTCAGCAT CTTCTTTGGG ACCCTCTTTG CAAACAGCGT TCTGGTGTAT ATCCAAGATA ATGTGGGCTG GACTCTTGGG
TATGCTCTTC CAACACTTGG CCTTTTAGTA TCAATCATGA TATTCCTGGC AGGCACACCC TTCTACAGGC ACAAAGTGCC
TGCTGGTAGT ACCTTCACTA GAATGGCTAG GGTCATTGTG GCTGCTTTGA GGAAATGGGA AGTGCCTGTC CCTAGTAACT
CTAAAGAACT ATATGAACTT GACAAGGAAG ACTATGCAAA GAAAGTGAAC TACAGAATTG ATCACACTCC AACACTCAAG
TTCCTTGATA AGGCCTGCGT TAAAACAGAT TCAAACACTA GTCCATGGAT GCTTTGCACA GTTACACAAG TGGAGGAGAC
AAAACAAATG CTAAGGATGA TTCCTATCTT GGTTGCTACT TTTGTTCCTA GTACAATGAT GGCTCAGATA AATACCCTTT
TTGTGAAGCA AGGAACTACT CTTGACAGAC ATATCGGAAG CTTCAAAATT CCCCCTGCTA GTTTGGCTGC ATTTGTTACT
GTGTCCTTGC TTGTGTGTGT TGTGCTCTAT GATCGTTTCT TTGTGAAGAT CATGCAAAGG TTTACCAAGA ACCCCAGAGG
CATTACCCTT CTTCAGAGGA TGGGAATTGG CCTTGTAATC CACACACTGA TCATGATCAT TGCATCTGGG ACAGAAAGCT
ATAGACTAAA GGTTGCAAGA GAACATGGAG TAGTTGAAAG TGGAGCACAG GTTCCTTTGA GCATATTCAT TTTGCTTCCT
CAGTTTATAC TGATGGGAAC TGCCGATGCC TTCTTAGAGG TTGCCAAAAT CGAGTTTTTC TATGATCAAG CCCCAGAACA
CATGAAGAGC ATCGGAACTT CGTATTCCAC AACTACCTTG GGCATTGGTA ACTTCATCAG TTCCTTTCTT CTCTCAACAG
TGTCACATGT CACCCAGAGA AATGGTCACA AGGGGTGGAT TTTGAACAAC CTGAACGAGT CTCATCTTGA CTACTACTAT
GCATTTTTCG CAGTACTAAA CTTCCTCAAC CTCATCTTCT TCGCGTTTGT TACAAGGTTC TATGTATATA GGGTTGAAGT
TTCAGATTCC ATTGACGTGC TTGCCAAAGA ACTGAAGGAA AAGACCGTGT CCAACGTTGT GAATCCCAGA GACTAGTAGT
TTCAAAACTT GCTGTTATGT ACAAATTTGG ATGGCCAACG AACTAAGTAT GTGTGTGTCT GTGGGGTGTG TGGGTGTTGA
CTTTGGAATG GTTTTGGTCA TTGGAAGCCA CTTCAGAAGA GAACCTAATC AAGTTATAGT TATTGGAGGT CGTTTTAGCA
TGTGATCGTT TTTCCTTATC CTTTGTAACC TTCGAGAAAT GTCACATGCA TCACCAAAAA AACAATATTG GGAAAAAGAA
ATGTAATGTC TTTGATGTTT ATCTTTTTTA GAACTTCTCT GGCCACTCAA GCTTTTCTTT AGTTAAGAAA TTGTACAATA
AAGGGTTGAA G

>Vigan.08G139600.01
ATGACCATGG AAGAGGGGAC GGTGGTGAAC CAGGACTACA CACAAGATGG AACTGTCAAC ATTAAAGGCA AACCTATTCT
TAGATCCAAC AGTGGTGGTT GGAAAGCTTG TTCCTTTGTA GTCGTGTATG AGGTATTCGA AAGGATGGCG TACTATGGAA
TATCATCAAA TTTGGTCGTG TATCTTACAA AAAAGCTTCA TCAAGGGACA GTATCATCTT CAAACAATGT CACCAACTGG
GTTGGCACCA TTTGGATGAC ACCAATTTTA GGTGCCTATG TTGCTGACGC TTTCCTCGGC CGCTATTGGA CTTTTACCAT
AGCCTCTACC ATTTATCTCT CGGGTATGTC TCTGCTTACA CTGGCAGTGT CCCTTCCGAG CCTAAAGCCA CCTGCATGCT
TCGAAAAGGA TGTGACAAAA TGCGCGAAAG CCTCCACACT ACAGCTAGCA GTGTTCTATG GTGCACTTTA CACTCTAGCA
GTGGGAACTG GAGGAACCAA GCCCAACATC TCCACCATAG GAGCTGATCA GTTTGATGAT TTTCACCCTA AAGAGAAGTT
GCATAAGCTC TCTTTCTTCA ATTGGTGGAT GTTCAGCATC TTCTTTGGGA CCCTCTTTGC AAACAGCGTT CTGGTGTATA
TCCAAGATAA TGTGGGCTGG ACTCTTGGGT ATGCTCTTCC AACACTTGGC CTTTTAGTAT CAATCATGAT ATTCCTGGCA
GGCACACCCT TCTACAGGCA CAAAGTGCCT GCTGGTAGTA CCTTCACTAG AATGGCTAGG GTCATTGTGG CTGCTTTGAG
GAAATGGGAA GTGCCTGTCC CTAGTAACTC TAAAGAACTA TATGAACTTG ACAAGGAAGA CTATGCAAAG AAAGTGAACT
ACAGAATTGA TCACACTCCA ACACTCAAGT TCCTTGATAA GGCCTGCGTT AAAACAGATT CAAACACTAG TCCATGGATG
CTTTGCACAG TTACACAAGT GGAGGAGACA AAACAAATGC TAAGGATGAT TCCTATCTTG GTTGCTACTT TTGTTCCTAG
TACAATGATG GCTCAGATAA ATACCCTTTT TGTGAAGCAA GGAACTACTC TTGACAGACA TATCGGAAGC TTCAAAATTC
CCCCTGCTAG TTTGGCTGCA TTTGTTACTG TGTCCTTGCT TGTGTGTGTT GTGCTCTATG ATCGTTTCTT TGTGAAGATC
ATGCAAAGGT TTACCAAGAA CCCCAGAGGC ATTACCCTTC TTCAGAGGAT GGGAATTGGC CTTGTAATCC ACACACTGAT
CATGATCATT GCATCTGGGA CAGAAAGCTA TAGACTAAAG GTTGCAAGAG AACATGGAGT AGTTGAAAGT GGAGCACAGG
TTCCTTTGAG CATATTCATT TTGCTTCCTC AGTTTATACT GATGGGAACT GCCGATGCCT TCTTAGAGGT TGCCAAAATC
GAGTTTTTCT ATGATCAAGC CCCAGAACAC ATGAAGAGCA TCGGAACTTC GTATTCCACA ACTACCTTGG GCATTGGTAA
CTTCATCAGT TCCTTTCTTC TCTCAACAGT GTCACATGTC ACCCAGAGAA ATGGTCACAA GGGGTGGATT TTGAACAACC
TGAACGAGTC TCATCTTGAC TACTACTATG CATTTTTCGC AGTACTAAAC TTCCTCAACC TCATCTTCTT CGCGTTTGTT
ACAAGGTTCT ATGTATATAG GGTTGAAGTT TCAGATTCCA TTGACGTGCT TGCCAAAGAA CTGAAGGAAA AGACCGTGTC
CAACGTTGTG AATCCCAGAG ACTAG

>Vigan.08G139600.01
MTMEEGTVVN QDYTQDGTVN IKGKPILRSN SGGWKACSFV VVYEVFERMA YYGISSNLVV YLTKKLHQGT VSSSNNVTNW
VGTIWMTPIL GAYVADAFLG RYWTFTIAST IYLSGMSLLT LAVSLPSLKP PACFEKDVTK CAKASTLQLA VFYGALYTLA
VGTGGTKPNI STIGADQFDD FHPKEKLHKL SFFNWWMFSI FFGTLFANSV LVYIQDNVGW TLGYALPTLG LLVSIMIFLA
GTPFYRHKVP AGSTFTRMAR VIVAALRKWE VPVPSNSKEL YELDKEDYAK KVNYRIDHTP TLKFLDKACV KTDSNTSPWM
LCTVTQVEET KQMLRMIPIL VATFVPSTMM AQINTLFVKQ GTTLDRHIGS FKIPPASLAA FVTVSLLVCV VLYDRFFVKI
MQRFTKNPRG ITLLQRMGIG LVIHTLIMII ASGTESYRLK VAREHGVVES GAQVPLSIFI LLPQFILMGT ADAFLEVAKI
EFFYDQAPEH MKSIGTSYST TTLGIGNFIS SFLLSTVSHV TQRNGHKGWI LNNLNESHLD YYYAFFAVLN FLNLIFFAFV
TRFYVYRVEV SDSIDVLAKE LKEKTVSNVV NPRD*