GBrowse Details

Vigan.08G140200.01

Basic Information:
Name: Vigan.08G140200.01
Multiple alignment
Variant Information
Position: Chr08:12386760..12390760 (- strand)
Length: 4001
Functional Information:
Description: Similar to peroxisomal membrane protein PMP22-like. [XP_004495354.1, Cicer arietinum]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Mpv17/PMP22 (IPR007248)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.03,6.66,17.51,3.39,90.72,17.65,32.87,13.98
Arabidopsis thaliana homolog: AT4G14305.1
Automatic updates:
Name: NM_001250736 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527292 (LOC100527292), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001370775 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxisomal membrane protein PMP22-like (LOC100527292), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:12386760..12386992 (- strand)
Length: 233
Type: three_prime_UTR
Position: Chr08:12386993..12387044 (- strand)
Length: 52
Type: CDS
Position: Chr08:12388021..12388106 (- strand)
Length: 86
Type: CDS
Position: Chr08:12388188..12388258 (- strand)
Length: 71
Type: CDS
Position: Chr08:12389370..12389445 (- strand)
Length: 76
Type: CDS
Position: Chr08:12389601..12389702 (- strand)
Length: 102
Type: CDS
Position: Chr08:12389984..12390082 (- strand)
Length: 99
Type: CDS
Position: Chr08:12390244..12390315 (- strand)
Length: 72
Type: CDS
Position: Chr08:12390316..12390760 (- strand)
Length: 445
Type: five_prime_UTR


>Vigan.08G140200.01
ACGGGATCAA TTGGATCCAA TCAAGACAGG CTTCCACGCG GGCAAAATTA CCATAAACAT GGCTAAATGC CTCTCCAATG
GAACCAAGAG ATTCCTTAAT CTTTCGTTCT TTTCTGCTAC TATTTTGAAA TGTTTAGGGT AGGTATTAAT TAATTAATTA
ATGGCTAATT AATATCTAAG AATTTCTGGG AAGGGATCAA ATTCGATTTT GGTCTAGTTT TGTCATGAAT ACGTTAACAC
CCTTCTGCAA CGCCATGCTT CGTGTGAATC GTGTGATTCA TGTGTAGTAC CTCCATTTGC TTTTGCCACC TAACCTCTGA
TACTTTCATT ACCCTTTCTA TATTTTCTAT GTTTCTGGTC ACTCTCCATC TTCTTCCATC TTTCAAAGGA TACGAGTAAC
TATCACAAAG TAAAAATACA CAAGATCCGG GCTTGATCAA CCACCATGTC TGACAAAGTC AACCATGTTT TCAAGAAATA
TCTTCACCAG CTTCAGCACC ATCCCCTCAG AACCAAGGCA ATTACCGCAG CAGTTTTGGC TGGTTTTAGT GATGCAGTTG
CACAGAAGAT ATCTGGGGCC AAGAAACTTC AGTTGAGAAG GCTGCTTCTT TTCATGCTCT ATGGTTTTGC CTACTCGGGA
CCCTTTGGAC ATTTTCTCCA CAAATTGATG GATAAAATTT TTAAGGGGCA GAAAGGCAAT GACACCGTTG CTAAGAAGGT
GATCCTTGAA CAGATAACCA GTTCCCCATG GAACAACTTC TTTTTCATGA TGTACTATGG CTTGGTTATA GAAGGAAGAC
CTTGGAGTAC AGTCACAAAC AAAGTTAAAA AGGATTATCC TTCTGTTCAA TTGACTGCAT GGAAGTTTTG GCCTGTAGTT
GGTTGGGTGA ATTACCAGTA TATGCCTCTG CAGCTCCGTG TTGTATTTCA CAGCTTTGTT GCTGCTTGCT GGGGAATCTT
TCTGAATCTG AAAGCAAGGT CTGTTGCAAT TAAGAATACG TAGGGCAAAT TTCAGACTTT TGGGTAATTT TCTGCCTGCT
TCCAATGTAA AGTGGGATGA AAAATCTACC ATGGGAGCAT TCACGGAAGT TTGTTTGCCA CATTAGACTA TTCTTTTTAA
TTTCCGCTGG CTGTCATCAC AGTTGAGTTG AGCTTTCAGT CGCACTATTG ATGAATGTGA CGTTACTTCT TATCGACATC
AATTATAATC ATAATATGAT TTTAAAAAAC CTTTTA

>Vigan.08G140200.01
ATGTCTGACA AAGTCAACCA TGTTTTCAAG AAATATCTTC ACCAGCTTCA GCACCATCCC CTCAGAACCA AGGCAATTAC
CGCAGCAGTT TTGGCTGGTT TTAGTGATGC AGTTGCACAG AAGATATCTG GGGCCAAGAA ACTTCAGTTG AGAAGGCTGC
TTCTTTTCAT GCTCTATGGT TTTGCCTACT CGGGACCCTT TGGACATTTT CTCCACAAAT TGATGGATAA AATTTTTAAG
GGGCAGAAAG GCAATGACAC CGTTGCTAAG AAGGTGATCC TTGAACAGAT AACCAGTTCC CCATGGAACA ACTTCTTTTT
CATGATGTAC TATGGCTTGG TTATAGAAGG AAGACCTTGG AGTACAGTCA CAAACAAAGT TAAAAAGGAT TATCCTTCTG
TTCAATTGAC TGCATGGAAG TTTTGGCCTG TAGTTGGTTG GGTGAATTAC CAGTATATGC CTCTGCAGCT CCGTGTTGTA
TTTCACAGCT TTGTTGCTGC TTGCTGGGGA ATCTTTCTGA ATCTGAAAGC AAGGTCTGTT GCAATTAAGA ATACGTAG

>Vigan.08G140200.01
MSDKVNHVFK KYLHQLQHHP LRTKAITAAV LAGFSDAVAQ KISGAKKLQL RRLLLFMLYG FAYSGPFGHF LHKLMDKIFK
GQKGNDTVAK KVILEQITSS PWNNFFFMMY YGLVIEGRPW STVTNKVKKD YPSVQLTAWK FWPVVGWVNY QYMPLQLRVV
FHSFVAACWG IFLNLKARSV AIKNT*